Search clustered SNPs in Brachypodium

Given a known SNP_id, use this form to find other SNPs containing sequences that align to the same region in Brachypodium.

At present, this is somewhat limited by the extent to which our wheat contigs align to the Brachypodium genome sequence: of nearly 38,000 wheat contigs in the CerealsDB database only 5,000, 13,000 and 19,000 (13.3%, 33.9% and 50.4%) align to Brachypodium at e-Values of 100, 45 and 10 respectively. You may select the e-Value used by us to BLAST the wheat contigs to Brachypodium; the lower the e-Value selected the greater the probability of finding a match so more SNPs will be listed.

SNP_id (e.g. BS00056992) 
Range (any integer value)
e-Value 100
e-Value 45
e-Value 10

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

Maintained by Mark Winfield.