Contig Sequence

Contig name: BC000012220 (Nimblegen Contig name: CONTIG08865)

Contains SNP BS00024026 at position 194 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code M, highlighted in red, translates to A or C).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 30 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM Map Location SxO cM
BS00024028 26 5A 92.08
BS00024042 77
BS00024025 176
BS00024026 194 6A 154.57
BS00024027 251 5D2 85.93
BS00024029 266
BS00024030 365 3B 159.84
BS00024031 401 6D2 70.50
BS00024032 446 7D 116.96
BS00024033 545 1D 108.23
BS00024034 551 4D 120.28
BS00024035 560 1D 107.69
BS00024036 572
BS00024037 587 1B 46.70
BS00024038 605 1D 46.79
BS00024039 641 1A 2.47
BS00024040 719 7A 31.36
BS00024041 737 7A 148.99
BS00024043 778
BS00024044 807
BS00024045 863 5D2 84.14
BS00024046 941 1B 21.36
BS00024047 992
BS00024048 996
BS00024019 1007
BS00024020 1037 5A 3.30
BS00024021 1040 4B 51.68
BS00024022 1043
BS00024023 1064
BS00024024 1091 7D2 100.43

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

Maintained by Mark Winfield.