Contig Sequence

Contig name: BC000036592 (Nimblegen Contig name: CONTIG92334)

Contains SNP BS00105939 at position 337 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code R, highlighted in red, translates to ).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 21 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00105938 33
BS00105940 34
BS00105943 38
BS00105949 56
BS00105930 111
BS00105931 127
BS00105932 166
BS00105933 214
BS00105934 290
BS00105935 292
BS00105936 295
BS00105937 325
BS00105939 337 5D2 70.34
BS00105941 343
BS00105942 348
BS00105944 385
BS00105945 391
BS00105946 395
BS00105947 396
BS00105948 400
BS00105950 577

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon