Contig Sequence

Contig name: BC000032842 (Nimblegen Contig name: CONTIG37297)

Contains SNP BS00088516 at position 297 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code Y, highlighted in red, translates to ).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 16 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00088523 123
BS00088513 123
BS00088514 210
BS00088515 237
BS00088524 284
BS00088516 297 2B 140.85 2B 82.59
BS00088517 305
BS00088525 309
BS00088518 309
BS00088519 311
BS00088520 336
BS00088521 342
BS00088522 352
BS00088526 375
BS00088527 377
BS00088528 396

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon