Contig Sequence

Contig name: BC000031931 (Nimblegen Contig name: CONTIG22376)

Contains SNP BS00084631 at position 898 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code M, highlighted in red, translates to ).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 14 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00084627 74
BS00084618 131
BS00084619 144
BS00084620 152
BS00084621 191
BS00084622 263
BS00084623 559
BS00084624 560
BS00084625 691
BS00084626 718
BS00084628 827
BS00084629 836
BS00084630 838
BS00084631 898

This contig has been mapped provisionally to chromosome 7DL.

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon