Contig Sequence

Contig name: BC000023868 (Nimblegen Contig name: CONTIG98914)

Contains SNP BS00061593 at position 134 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code K, highlighted in red, translates to ).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 17 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00061593 134
BS00061594 145
BS00061595 208
BS00061596 210
BS00061597 235
BS00061598 244
BS00061599 254
BS00061600 257
BS00061601 293
BS00061602 366
BS00061603 388
BS00061604 390
BS00061605 423
BS00061606 552
BS00061607 568
BS00061608 590
BS00061609 601

This contig has been mapped provisionally to chromosome 7AL.

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon