Contig Sequence

Contig name: BC000001870 (Nimblegen Contig name: CONTIG28702)

Contains SNP BS00010629 at position 479 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code R, highlighted in red, translates to ).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 16 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00005875 121
BS00003364 394
BS00003991 424
BS00005876 432
BS00005877 433
BS00005878 435
BS00005007 436
BS00005879 436
BS00005880 438
BS00005881 439
BS00005882 440
BS00005883 441
BS00003845 463 2A 27.13 2A 14.36
BS00004192 463
BS00016017 472
BS00010629 479 2A 17.99

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon