Contig Sequence

Contig name: BC000000756 (Nimblegen Contig name: CONTIG50273)

Contains SNP BS00009817 at position 503 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code W, highlighted in red, translates to ).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 12 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00001262 14
BS00006949 50
BS00013281 83
BS00012788 134
BS00006948 260
BS00015236 275
BS00006947 293
BS00009258 347 2B 94.37 2B 43.36
BS00013486 398
BS00013067 446
BS00009817 503 2A 116.73 2A 118.88
BS00006946 704

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon