Contig Sequence

Contig name: BC000037405 (Nimblegen Contig name: F0Z7V0F01B2A83)

Contains SNP BS00109922 at position 261 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code R, highlighted in red, translates to A or G).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 15 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00109921 26
BS00109924 29
BS00109930 43
BS00109931 52
BS00109932 72
BS00109918 167
BS00109919 237
BS00109920 241
BS00109922 261
BS00109923 275
BS00109925 299
BS00109926 300
BS00109927 329
BS00109928 348
BS00109929 403

This contig has been mapped provisionally to chromosome 6AS.

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon