Contig Sequence

Contig name: BC000035034 (Nimblegen Contig name: CONTIG72701)

Contains SNP BS00097194 at position 390 (ambiguity code highlighted in red in the sequence below).

GGCTACAACTGCACCATGACCAGTGGTGCAGCCACCCGCGGCGCCCTCGGCCCCTTCGGCATTCTCGTCCTCGCCAACGTCGCCCTGACCGAACAGACGGCGGTGTACTTTTATGTGTCCAAGGGCCTCGACGGCGGTCTTCGGACGCACTTCTGCCACGATGAGTTGCGGTCGACACATGCTACCGATGTGGCGAAGGAGGTGGTGGGTAGCACGGTGCCGGTGCTCGATGGCGAGGATTTTTCCGTTAGGGTGCTCGTGGACCACTCCATCGTGCAGAGCTTTGTGATGGGCGGGAGGATGACGGCGACGTCAAGGGCGTACCCGACGGAGGCCATTTACGCGGCGGCTAGGGTGTACCTGTTCAACAATGCTACCAGCGCCAGCAT[Y]ACCACTGAGAAGCTCATCGTGCACGACATGGATTCGTCGTACAACCGGATATTCACAGACAACGACTTGGTAGTCCTCAATTAGACTGATCACCTACAACAAGTTATGGATTTTTGCTAGGTTGATGGCTTCCTTTTCTCTTGGACAGATGGTGGTGGAGTTCCGGCTACTCTACCTATCATCTTGATTTATGTTCTTTGTTGCGGTTTTGGTTTTAGATGATGTTGATGATGTTGGACACTTGTAAATCAATTACGGGTGAATTAAAGGGCATGGATGCCTGCCACCAAATAT

Note: The ambiguity code Y, highlighted in red, translates to C or T).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.



All SNPs on contig

There are 18 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00097192 36
BS00097197 78
BS00097198 80
BS00097199 99
BS00097182 132
BS00097183 144
BS00097184 188
BS00097185 232
BS00097186 234
BS00097187 243
BS00097188 245
BS00097189 285
BS00097190 321
BS00097191 357
BS00097193 375
BS00097194 390
BS00097195 414
BS00097196 465

This contig has been mapped provisionally to chromosome 4AL.




BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 


Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 


e-value cutoff: 








Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon