Contig Sequence

Contig name: BC000033386 (Nimblegen Contig name: CONTIG45983)

Contains SNP BS00090678 at position 809 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code R, highlighted in red, translates to A or G).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 24 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00090659 195
BS00090660 231
BS00090661 342
BS00090662 345
BS00090663 348
BS00090664 355
BS00090665 383
BS00090666 385
BS00090667 411
BS00090668 438
BS00090669 493
BS00090670 516
BS00090671 573
BS00090672 576
BS00090673 591
BS00090674 593
BS00090675 783
BS00090676 804
BS00090677 806
BS00090678 809 2D 18.83
BS00090679 849
BS00090680 865
BS00090681 894
BS00090682 910

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon