Contig Sequence

Contig name: BC000032294 (Nimblegen Contig name: CONTIG28434)

Contains SNP BS00086228 at position 805 (ambiguity code highlighted in red in the sequence below).

TAAAAAGGATTTTCAAGAAGCAAAACTGGAAGCAAGCCCTCGTGTAGTAGCAGTAGTAGCAGAAGAAACTTATGCTGTCCATGATGAGCTGAAGCAGGTAGATACTTTGTCACCTGAAGAGTATTCTGATGAAGGTTGGCAAGCAGCTACATTGAAAGGGAGATCTGCAAATGTGCGGAAGAAAAGCATCCGCAGAAGGTCATCTCTCACCAAATTAGTGGTTGATCGTACAGAAGATGGTCGCACTGCTTCTGCTCATAGGAGTGGTGTACAACCACAAGCAAAAGAGCATAAAGAGGAAGCTGTAAACTCCCCTAGCCAACTATCGTTTGGCAACTTTATCAGAAGTGACAAATTGAACGGGGATCCCGTCATTACCGAAGAGAAGACTTCTAAGGGTACGTCTAAATCGGAATGGAAGGTAAAGCCCACAGGAATCAAGAGGCCAACTAGCATAGCTTCAAAGTTGGTATCATACAAAGATGTGGCAGTATCACCGCCTGGCACAGTGTGGAAACCAATTTTGGAACAGAAGGAAACAAAGGAGAAGGATAACGAGCAAGATACTGATGTAGCACCTTCATCCGAGGAAGGAGATAGAAAGCTTATAGATGAAGAGAAGGAGAAGTCAAGTGATGAGAGCAGCAAAGAGATTGTCTCAAGTCAGCCAGAGGGAAGCAGTCCCCCAGAGCCAGAGAAAGCTTCTGACAGCAATAGTGACGGAAGCTCATCTCCGGGCAAGAAAACAAGTGGAAGCAAACTTTCAGCTTCAGCACCTCCATTCAAACCTGGATCGCTCTTATC[R]GTGTCCCATCCTTACAGCACAGTGGCAATATATGATGCTAGCGTTGTGCTTCAGCCGATTCCAAGTCAAGCAATGGAGGTTCTCCCTCATGCTGTCGATACTAGAGTACCCCGTGGTCCTCGGTCCACCTTGTACTATCGTACTGGGCATTCTTTCCAAAGGAAACAGGGTTATACACAGAGCCAGAGCACTATTCTGAGGGGCAGCACCTNNNNNNNAACCATGAACCCCCATGCTGCTGAGTTTGTGCCTGGAAAAACTGTGCAACAAACTGATTTGGCTGCAGGGGAACAAGCTAATTCTGTGACTGATCCAGCAGATCAGCAGTTGGCATCACATGCCTCAGATGAAGTGAAAGTTGATGTTCGTGAGGCAGACAAGGCAGGTCAAGTGGAGAAGACAACTCCAGGTAAAGTGAAGGAACGAGCGAAAGACGCGACGAGAGATTCATACAAAGCAGAACTTGCAAGGCAGATTCTGCTCAGCTTCATTGTCAAGTCAGTCCATGACAGCTTAGGTTCGACTCGACCCCAACCGGACAGAAAACCAAGCGGGTCAGATGAAGCTAGTAACGAACAGAGCAGCAACGTAACCAAGACCGCCTCAAGTCCGAAAGAGTTCGACAAACAACCGAAGGCCGCCGAGGTGCCCAAGAGCGAGAAGGATACAGAGGGGTTTACAGTAGTCTCAAAGCGTAGGAAAAGCAAGCAGCACTTCGTGAACCCCATAAACGGTCTCTACTCTCAGCAGTCAATCTGCACTTCGGTCAGCTGA

Note: The ambiguity code R, highlighted in red, translates to A or G).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.


All SNPs on contig

There are 24 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00086226 77
BS00086217 181
BS00086218 211
BS00086219 316
BS00086220 649
BS00086221 656
BS00086222 661
BS00086223 675
BS00086224 685
BS00086225 688
BS00086227 796
BS00086228 805
BS00086205 1076
BS00086206 1086
BS00086207 1107
BS00086208 1144
BS00086209 1197
BS00086210 1206
BS00086211 1208
BS00086212 1213
BS00086213 1273
BS00086214 1399
BS00086215 1405
BS00086216 1410

This contig has been mapped provisionally to chromosome 2DL.



BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 


Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 


e-value cutoff: 






Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon