Contig Sequence

Contig name: BC000032117 (Nimblegen Contig name: CONTIG25387)

Contains SNP BS00085460 at position 337 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code Y, highlighted in red, translates to C or T).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 19 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00085451 120
BS00085452 122
BS00085453 156
BS00085454 179
BS00085455 211
BS00085456 220
BS00085457 221
BS00085458 238
BS00085459 318
BS00085460 337
BS00085461 338
BS00085462 342
BS00085463 344
BS00085464 352
BS00085465 386
BS00085466 388
BS00085467 390
BS00085468 533
BS00085469 586

This contig has been mapped provisionally to chromosome 3DS.

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon