Contig Sequence

Contig name: BC000031483 (Nimblegen Contig name: CONTIG14197)

Contains SNP BS00082967 at position 739 (ambiguity code highlighted in red in the sequence below).

ATATGAAGCGTATGCCTTGGAAGACATCTCCATGCCGTACTTGCCGGTGAAGAAGTTGACCTCGTGCATGTTGCGGTAAAAGGCACCGCCCTGTCGCTCGTCGCCGGAGCCGATGACAATGTGTCGCGCCGTGGAATTTGTGTCCAAGGTATTGCGGAAGTGCGGCTTGAGGAGCTTGTGGATTGGGTGCAGCACGCTCATCTGCCGGTTCGCCGCCAGCACCACCGGCTCCATCGTCGCGTGCGTCCTCAGCCAGTGGAGGACATAGTTGTTCTTGCATGCGTCGTTGGATGCGGCATGGGCCTTGGCGAGGTCCCATGCCGTGAAGGTGTCGGAGGCGGCATCGCCGGCTTTGAGTTCGTCGGGCGGAGTGTACACCGTGCTAGTGGCGCCGAGGCGCTCATCCTTGGGGTGCGGCGAGCTGAGCTCGATCGCCAGCGGCTTGAGTGTGGAGTCGTCTTGCAAGAAGAAGAGCGTCCTCGTGGCGTACGACTTCCTCTGGGAGATCTCGCCCTTCTCCTCGGCGCCTGGCAGCTGGTTGATGCGCTTCAGGTACGGCATCACCCAGTCGTGGTGATCCACAGCGTACAACCTGTCCTTTTCTATAGCCTGCGCCACAGTCATGTTTCCCAAGTTCTTCTCAATGTGCTCTTTGGTTATCTTGCTGTCTTGGTCACCATACACGGCCCGGTCAAGCTTGCTCGTGAGTGTGAGAGCGGTGACGAGCTCGATGGAGAG[R]GGGTTTGCCCCTGCGAGTGTTTGCCTGGCGAACTCTTCATCCGTCCGCCAAGCTGTTCGATTCGCTGAGATGACCTGGGGGACGGGGAACGGGAAGGGCTTGGCGTTGCTGTCGAAAAGGCCGTGGACATCCGCCAACGACCCGAAGTGGCCGTCGAGTTTGGGAAGGTTGGGCGCCGCGGCCACGCCGCCGGTCCGCTCGTCGCACGGGATGTAGATCCCTTCCTCCAGTGACGCCCTCGTCTCGCTCGCGGGATCGGCCTTGCTCGGAGGCCGGCTGGTCCTGGTCCGGCGAGGGTACGGGTACTCTTTGGACCCTCCCAGCACCGGGCGCGCCAGGTCCTCGCGCAGGTCGGGGTTCCCCAGGTCGTTGTAGAGCGCGTAGTCGTACACGCGGTCCCATTTCTGCAGCGGCTTGTCGGCCGGCGAGCCCTCGCCCCGGAGCAGGCGGAGCTCGTCTTCCC

Note: The ambiguity code R, highlighted in red, translates to A or G).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.


All SNPs on contig

There are 23 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00082947 106
BS00082948 181
BS00082949 201
BS00082950 217
BS00082951 219
BS00082952 366
BS00082953 385
BS00082954 424
BS00082955 524
BS00082956 526
BS00082957 537
BS00082958 568
BS00082959 571
BS00082960 584
BS00082961 586
BS00082962 640
BS00082963 685
BS00082964 711
BS00082965 716
BS00082966 736
BS00082967 739
BS00082968 751
BS00082969 979

This contig has been mapped provisionally to chromosome 2BL.



BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 


Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 


e-value cutoff: 






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