Contig Sequence

Contig name: BC000025008 (Nimblegen Contig name: F0Z7V0F01DWYTB)

Contains SNP BS00065500 at position 281 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code R, highlighted in red, translates to A or G).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 21 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00065501 79
BS00065507 79
BS00065502 81
BS00065503 103
BS00065508 106
BS00065488 125
BS00065504 163
BS00065505 175
BS00065489 190
BS00065490 191
BS00065491 196
BS00065492 200
BS00065506 202
BS00065493 214
BS00065494 232
BS00065495 240
BS00065496 255
BS00065497 258
BS00065498 262
BS00065499 264
BS00065500 281

This contig has been mapped provisionally to chromosome 6AS.

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon