Contig Sequence

Contig name: BC000023458 (Nimblegen Contig name: CONTIG97361)

Contains SNP BS00060058 at position 370 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code R, highlighted in red, translates to A or G).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 16 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00060049 141
BS00060050 174
BS00060051 183
BS00060052 224
BS00060053 231
BS00060054 298
BS00060055 303
BS00060056 342
BS00060057 359
BS00060058 370
BS00060059 387
BS00060060 513
BS00060061 567
BS00060062 594
BS00060063 610
BS00060064 633

This contig has been mapped provisionally to chromosome 1DS.

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon