Contig Sequence

Contig name: BC000020056 (Nimblegen Contig name: CONTIG77639)

Contains SNP BS00046672 at position 221 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code Y, highlighted in red, translates to C or T).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 17 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00046675 36
BS00046676 37
BS00046677 52
BS00046661 116
BS00046662 120
BS00046663 143
BS00046664 168
BS00046665 174
BS00046666 177
BS00046667 183
BS00046668 195
BS00046669 203
BS00046670 205
BS00046671 212
BS00046672 221
BS00046673 233
BS00046674 237

This contig has been mapped provisionally to chromosome 6AS.

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon