Contig Sequence

Contig name: BC000014693 (Nimblegen Contig name: CONTIG21593)

Contains SNP BS00031724 at position 220 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code Y, highlighted in red, translates to C or T).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 19 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00031735 80
BS00031717 116
BS00031718 119
BS00031719 125
BS00031720 137
BS00031721 154
BS00031722 164
BS00031723 212
BS00031724 220
BS00031725 250
BS00031726 260
BS00031727 269
BS00031728 277
BS00031729 284
BS00031730 287
BS00031731 296
BS00031732 320
BS00031733 338
BS00031734 377

This contig has been mapped provisionally to chromosome 4AL.

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon