Contig Sequence

Contig name: BC000002188 (Nimblegen Contig name: CONTIG27188)

Contains SNP BS00009795 at position 914 (ambiguity code highlighted in red in the sequence below).


Note: The ambiguity code K, highlighted in red, translates to G or T).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 15 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00006944 92
BS00014415 103
BS00022580 224
BS00014383 239
BS00016800 257
BS00011203 281
BS00010728 320
BS00003792 374 6B 0.63
BS00010958 383
BS00012125 413
BS00011804 416
BS00009967 575 6B 0.63
BS00009795 914 6B 0.63
BS00010862 917
BS00019491 1055

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon