CerealsDB

Contig Sequence

Contig name: BC000036150 (Nimblegen Contig name: CONTIG89141)

Contains SNP BS00102772 at position 187 (ambiguity code highlighted in red in the sequence below).

GCCAAACAAGAAAATTGGGTATGGAATCCAAATCCCACCAAACGAAATCCTCTCAGGATTGTGTTTTCACTTCATTTCCACCAATGAAATGAAAAGCTAGGTGCCAAACGAGCTGGTATGGAAATCACTATTTGGAGTGTCGTCTCTCAACTCATAACATGATCATCTAGACAACCACAAAGAAAG[Y]AGAGGTTTATTACTTATTTTAACAAGCCCGCATCTTTATATATGTGACTAAGTTTCATACACCCGCTAATGGGATCCCCCACCTCTTCATTATTGTGTGTGAGAGTGATGTGCCTGTTATTTATCGCACTACTCATTCCACTGATAGTAAATGACACTTAAAATCCTTTTATTTTAACCTTTTCTAGAGATATCCACAGGGTAGCAATTGATGCAGTCAACCCAGGGTCCATCCGCGCAGGAAGATGGTTGTATACACACCCAAGTAGCGGTGTTGCACTCGTACCCTGCACCAAATCCGATCATCCACACCCTATCGCCTTTCTTCATTAGGCCTTTAGCGTCGATGTATGCCAACTCATACCACACTGATGCGGCCGACTGGTTTCCAAAGCGATACAATGTCATTCGTGACGGTTCAACGTGCTTGTCTGATAGATTGAGGCCGCGCTGTATTGAGCTGATAACCGCAGGTCCACCTACGTGGATGCATATATGTTCAAATGCAACACAGAAGTTGGGGATGTATGGTCTAATCTTCCTCCAATAGAGCACCTTTCCAGCAATGTCNNNNNNNNNNNNCTTGAGAAGCTCTGCTGTCGGCAGTACAAGTGGCCCGCTTGTAGTGAGATTGTCCTTGAGTGCGTCTCCAGCAACAACCATAAGGTCTTTAGTGAGACGTGTCCCTAGGATGCCCTTCTCATCTTCCTCCTGATATGCACATCGGTACGCGGAGTTGTTTGCCGCAGTGATTATCCGCGTGACATGCGCAAGCTCAAACCGAGCTTTTGACCTAGAAGTCGACAACAACTTCGCCACTCCACCTGTGCGGAATAAGATGTTAGGCAACTGCATGGAGCGTGTATTCCCTTGATAGTGGCACGGCCCAGTGGTCTCTGTTGACACTATCAATGCATGCGACCCCCAAGGCATGACCTGCAACATATTGCTTGCGAGCCCCACTGCGGTCACTGAAGCAGAGCACGCCATCCCTGAGAGGTTCATTACGCGAAGATCACCTCGCAACTTGTATCTATTGACAATCATGTCAGCAATGGATGGTATCGGACAAAATATACTTGAGGTGGTGATAAGAACACCGATCGCGTCACGATTGATGCATGTTTTGGCCAAAAGATCATCGATCACCGAGAAGACAATTGACTCTGCTTCGGCACGTGCGTCGTAAAGCCCACAATATGGCTCTATATAGTGAAGCACAGGCGGGACATATGTCTCATCGCTCATTTCTGAGCGCTTGAGAACTGTTCCTATGAAGTTGACAGTAGAATCATCAAGCAAAGACGAGAGATGTGCATGCTCGAGGAAGGTTGCCTTTGGGCATCTTAGGTTGAAACTTGGCCGGAAGCAAGCGTAGTCAACAAGGTATACAGTTTTACGACAGAGTGCAAGGTAGATGGTTGCGGTGATGGTCAGTAGAACGATGGCAAGAAGTAGGTGGATGGGATAAATAGCTCCGGGTTGAG

Note: The ambiguity code Y, highlighted in red, translates to C or T).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 22 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id	Position	Map Location AxC	cM	Map Location SxR	cM
BS00102774	43
BS00102772	187
BS00102773	254
BS00102775	475
BS00102776	487
BS00102777	581
BS00102778	601
BS00102779	709
BS00102780	836
BS00102759	1158
BS00102760	1180
BS00102761	1195
BS00102762	1209
BS00102763	1210
BS00102764	1225
BS00102765	1331
BS00102766	1333
BS00102767	1405
BS00102768	1436
BS00102769	1453
BS00102770	1454
BS00102771	1549

This contig has been mapped provisionally to chromosome 7DS.

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button. At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries. However, this site is actively being worked on and we hope to be able to add additional libraries.

Based at the University of Bristol with support from BBSRC.