Obtain contig information

Using the input fields below you can access information in several different ways:

1) Enter a SNP name (a 10 character alphanumeric beginning with 'BS' or 'BA'; e.g., BS00010624 or BA0033400) to find the contig to which it maps and all other putative SNPs, validated or not, that have been mapped to it. SNP names (IDs) may take different forms depending on the platform on which the assay was developed:

KASP assays BS00003643
Axiom array BA00334300

SNP names with 'BS' codes may have an extention (e.g., '.1', '.2'. These should not be added when performing a search; if they are added they will be removed by the program before the search is performed.


2) Enter a contig name (e.g., contig98294) in order to find the SNP(s) that map to it.

3) Enter a search term (e.g., disease) in order to obtain a list of contigs that when BLASTed against the NCBI database returned a hit containing the chosen term.

1) SNP_id (e.g. BS00003643(.1) or BA00334300) 
2) Contig name (e.g. BC000000280) 
3) Search term (e.g., 'disease', 'cold') 



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

Maintained by Mark Winfield.


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