Contig Sequence
Contig name: BC000004079 (Nimblegen Contig name: CONTIG92692)
Contains SNP BS00009263 at position 472 (ambiguity code highlighted in red in the sequence below).
Note: The ambiguity code Y, highlighted in red, translates to C or T).
The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.
All SNPs on contig
There are 6 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped in a particular cross, the corresponding fields in the table are left blank.
| SNPs id | Position | Map Location AxC | cM | Map Location SxR | cM | Map Location SxO | cM |
| BS00013665 | 301 | ||||||
| BS00012441 | 442 | ||||||
| BS00017394 | 460 | ||||||
| BS00009263 | 472 | 2B | 28.73 | ||||
| BS00014174 | 583 | ||||||
| BS00006788 | 924 | 2B | 28.73 | 2A | 16.74 | 2A | 21.21 |
BLAST information
To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.
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Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button. At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries. However, this site is actively being worked on and we hope to be able to add additional libraries.
Based at the University of Bristol with support from BBSRC.
