Information on the arrays and mapping populations

To date, we have genotyping data garnered from three different array formats (820K Array, 35K Breeder's Array and 35K Wheat Relative Array) relating to 37 mapping populations. This page provides details of these arrays and populations. To find out which varieties are included on a particular array or mapping population, please select from the table below.

To download all genotyping data for a particular variety or line, select an array or mapping population from the table below and submit. You will then be able to scroll through and select (or search) for varieties on the array or mapping population.

Information on each array and mapping population is described below the table, along with the option to download the entire dataset in .csv format

Select an array or mapping population
820K_array35K_breeders_array
35K_relatives_arrayAvalonxCadenzaDH
ApogeexParagonf5Boden_tilling_samples
CadenzaxAvalon_f5Chinese_Spring_Deletions
Doonan_sphaerococcumxCapelleChineseSpringxParagon
JIC_Toolkit_3MalaccaxHereward
NIAB_smelNIAB_D_Synthetics
OakleyxGatsbyParagonxBaj
ParagonxBecard_kachuParagonxCimcog47
ParagonxCimcog49ParagonxExtrem
ParagonxMisr1ParagonxPfau
ParagonxStarkeshortdayParagonxSuper152
ParagonxTet_syn_BC1F5ParagonxTetraploid_BC1F5
ParagonxWatkinsINEWParagonxWatkins_305
ParagonxWatkins912ParagonxWaxwing
ParagonxWyalkatchemShamrockxShango
TetxHex_synth_NAM_populationWeebilxCimcog03
WeebilxCimcog32WeebilxCimcog56
Yumai34xClaireYumai34xUkrainka
Yumai_34xValorisZinc_content_ParagonxWatkins



820K array

All available genotyping for the 820K array (476 varieties).

Please Note: The 820K array data is too large to display online. Individual lines can be selected below and downloaded as a text file that can be opened using excel. If you wish to download all the 820K genotyping data click here to download.

35K breeders array

All available genotyping for the 35K breeders array (2,188 varieties).

If you wish to download all the 35K breeders array genotyping data click here to download as .zip file.

35K wheat relatives array

All available genotyping for the 35K wheat relatives array (278 varieties).

If you wish to download all the 35K breeders array genotyping data click here to download as .csv file.

Avalon x Cadenza

This is a population of doubled-haploid (DH) individuals, derived from F1 progeny of a cross between the cultivars Avalon and Cadenza. It was developed by Clare Ellerbrook, Liz Sayers and the late Tony Worland (John Innes Centre), as part of a Defra funded project led by ADAS. The parents were originally chosen (to contrast for canopy architecture traits) by Steve Parker (CSL), Tony Worland and Darren Lovell (Rothamsted Research).

If you wish to download all the Avalon x Cadenza genotyping data click here to download as .csv file.

Chinese Spring x Paragon

This is an F6 SSD population produced by WGIN. Parents are Chinese Spring and Paragon. CS is the international reference genome and Paragon is the common parent in many UK efforts, both are sequenced.

If you wish to download all the Chinese Spring x Paragon genotyping data click here to download as .csv file.

Paragon x Starke Short Day

This is an F4 SSD population with Paragon and Starke parents. Starke is a Swedish variety released between 60-70 that exhibits a stronger than usual delay in heading time when grown under short days. Starke is in the GEDIFLUX collection.

If you wish to download all the Paragon x Starke Short Day genotyping data click here to download as .csv file.

Paragon x tetraploid BC1F5

This mapping population was created with Paragon and tetraploid (durum and dicoccoides donors) parents, as part of the Designing Future Wheat Synthetics pillar. Seed from each plant has been deposited at the GRU.

If you wish to download all the Paragon x tetraploid BC1F5 genotyping data click here to download as .csv file.

Yumai34 x Claire

This is an F5 SSD population with Yumai34 and Claire parents. Yumai 34 is a Chinese cultivar show to contain high soluble fibre in the Healthgarin project, Claire is a very successful UK biscuit wheat. (Shewry, P.R., 2009. The HEALTHGRAIN programme opens new opportunities for improving wheat for nutrition and health. Nutrition Bulletin, 34(2), pp.225-231.)

If you wish to download all the Yumai32 x Claire Short Day genotyping data click here to download as .csv file.

Yumai34 x Ukrainka

This is an F5 SSD population with Yumai34 and Ukrainka parents. Yumai 34 is a Chinese cultivar show to contain high soluble fibre in the Healthgarin project, Ukrainka is a Hungarian variety that is productive and adaptable, with excellent baking quality . (Shewry, P.R., 2009. The HEALTHGRAIN programme opens new opportunities for improving wheat for nutrition and health. Nutrition Bulletin, 34(2), pp.225-231.)

If you wish to download all the Yumai34 x Ukrainka genotyping data click here to download as .csv file.

PxBaj

This is an F4 SSD population with Paragon and Baj parents. Baj is a very early maturing, heat & drought tolerant line well adapted to Eastern Gangetic plains The CIMMYT Cross name is PARAGON:AE/BAJ #1

If you wish to download all the Paragon x Baj genotyping data click here to download as .csv file.

PxBecard_kachu

This is an F5 SSD population with Paragon and BecardKachu parents. Becard/Kachu performed well in CIMCOG trial in Obregon under the wheat yield consortium led by Matthew Reynolds. Kachu was released by CIMMYT for cultivation in northwestern India it is derived from Bacanora. Becard is derived from Weebill. The CIMMYT Cross name is PARAGON:AE/BOKOTA

If you wish to download all the Paragon x Becard_kachu genotyping data click here to download as .csv file.

P x CIMCOG47

This is an F5 SSD population with Paragon and CIMCOG 47 parents. CIMCOG line information here. The CIMMYT Cross name is PARAGON:AE/4/SOKOLL//PBW343*2/KUKUNA/3/NAVJ07

If you wish to download all the Paragon x CIMCOG47 genotyping data click here to download as .csv file.

P x CIMCOG49

This is an F5 SSD population with Paragon and CIMCOG 49 parents. CIMCOG line information here. The CIMMYT Cross name is PARAGON:AE/3/TACUPETO F2001/BRAMBLING*2//KACHU

If you wish to download all the Paragon x CIMCOG49 genotyping data click here to download as .csv file.

PxMISR1

This is an F5 SSD population with Paragon and MISR1 parents. MISR1 was released by CIMMYT in Egypt, Afghanistan, Pakistan and carried Sr25 segment. The CIMMYT Cross name is PARAGON:AE/MISR 1

If you wish to download all the Paragon x MISR1 genotyping data click here to download as .csv file.

PxPfau

This is an F5 SSD population with Paragon and Pfau parents. Pfau is an early maturing CIMMYT variety. The CIMMYT Cross name is PARAGON:AE/PFAU

If you wish to download all the Paragon x Pfau genotyping data click here to download as .csv file.

PxSuper152

This is an F5 SSD population with Paragon and Super 152 parents. Early maturing variety that performed very well in CIMMYT ESWYT trials, identified as having potential for wide adaptation in India. The CIMMYT Cross name is PARAGON:AE/SUP152

If you wish to download all the Paragon x Super152 genotyping data click here to download as .csv file.

Paragon x Synth Type

This is an F5 SSD population with Paragon and Synth Type parents. The CIMMYT Cross name is PARAGON:AE/6/SAUAL/4/CROC_1/AE.SQUARROSA (205)//KAUZ/3/ATTILA/5/SAUAL

If you wish to download all the Paragon x Synth Type parents genotyping data click here to download as .csv file.

PxWaxwing

This is an F5 SSD population with Paragon and Waxwing parents. The CIMMYT Cross name is PARAGON:AE/WAXWING

If you wish to download all the Paragon x Waxwing genotyping data click here to download as .csv file.

PxWyalkatchem

This is an F6 SSD population with Paragon and Wyalkatchem parents. Wyalkatchem is an Australian variety very widely grown until recently. The CIMMYT Cross name is PARAGON:AE/WYALKATCHEM

If you wish to download all the Paragon x Wyalkatchem genotyping data click here to download as .csv file.

Weebil x CIMCOG03

This is an F5 SSD population with Weebill1 and CIMCOG 03 parents. CIMCOG line information here. The CIMMYT Cross name is WEEBILL1/6/ATTILA*2/PBW 65*2/5/REH/HARE//2*BACANORA T 88/3/CROC_1/AE.SQUARROSA (213)//PAPAGO M 86/4/HUITES F 95

If you wish to download all the Weebil x CIMCOG03 genotyping data click here to download as .csv file.

Weebil x CIMCOG32

This is an F5 SSD population with Weebill1 and CIMCOG 32 parents. CIMCOG line information here. The CIMMYT Cross name is WBLL1/6/ATTILA*2/PBW65*2/5/REH/HARE//2*BCN/3/CROC_1/AE.SQUARROSA (213)//PGO/4/HUITES

If you wish to download all the Weebil x CIMCOG32 genotyping data click here to download as .csv file.

Weebil x CIMCOG56

This is an F5 SSD population with Weebill1 and CIMCOG 56 parents. CIMCOG line information here.

If you wish to download all the Weebil x CIMCOG56 genotyping data click here to download as .csv file.

Malacca x Hereward

This is a population of doubled-haploid (DH) individuals, developed by RAGT Seeds and selected to segregate for a range of breadmaking qualities.

If you wish to download all the Malacca x Hereward genotyping data click here to download as .csv file.

Paragon x Extrem

This is a Paragon x Extrem mapping population. Extrem is an Austrian cultivar while Paragon is a common UK parent.

If you wish to download all the Paragon x Extrem genotyping data click here to download as .csv file.

Paragon x Watkins_305

The Paragon x Watkins Toolkit is DFW pre-breeding output in which loci of interest are captured in relatively uniform genetic backgrounds. Watkins 305 is a landrace sourced from Egypt and Paragon is a common UK parent. More information here.

If you wish to download all the Paragon x Watkins_305 genotyping data click here to download as .csv file.

Paragon x Watkins912

The Paragon x Watkins Toolkit is DFW pre-breeding output in which loci of interest are captured in relatively uniform genetic backgrounds. Watkins 912 is a landrace sourced from Hungary and Paragon is a common UK parent. More information here.

If you wish to download all the Paragon x Watkins912 genotyping data click here to download as .csv file.

Zinc content Paragon x Watkins

This is a Paragon x Watkins mapping population to observe Zinc uptake efficiency.

If you wish to download all the Zinc content Paragon x Watkins genotyping data click here to download as .csv file.

JIC Toolkit 3

The Toolkit is DFW pre-breeding output in which loci of interest are captured in relatively uniform genetic backgrounds.

If you wish to download all the JIC Toolkit 3 genotyping data click here to download as .csv file.

Paragon x Tetraploid synthetic BC1F5

These are lines derived from NIAB synthetic Hexaploid Wheat in which the tetraploid parent differs. More information here.

If you wish to download all the Paragon x Tetraploid synthetic BC1F5 genotyping data click here to download as .csv file.

Tet x Hex synthetic NAM population

This is a Nested Association Mapping (NAM) population derived from NIAB synthetic Hexaploid Wheat. More information here.

If you wish to download all the Tet x Hex synthetic NAM population genotyping data click here to download as .csv file.

Yumai_34 x Valoris

If you wish to download all the Yumai_34 x Valoris genotyping data click here to download as .csv file.

Cadenza x Avalon f5

If you wish to download all the Cadenza x Avalon f5 genotyping data click here to download as .csv file.

Chinese Spring deletions

If you wish to download all the Chinese Spring deletions genotyping data click here to download as .csv file.

Apogee x Paragon f5

If you wish to download all the Apogee x Paragon f5 genotyping data click here to download as .csv file.






Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

Maintained by Mark Winfield.


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