iSelect SNP Summary Information

Summary information for the SNP BS00154315 is listed below:

Map location in various crosses

Avalon X Cadenza 6B
Savannah X Rialto 6B
Cross 1
Cross 2
Cross 3
Cross 4
Cross 5
Cross 6 6B
Deletion lines 6A
9K iSelect array

Consensus Chromosome: 6B


BLAST sequence

To BLAST the above sequence against our SNP database click on the 'Queryi SNP databse' button below. You may select an e-value cut-off for this search.

e-value cutoff 

Alternatively, you may perform a BLASTN against Brachypodium, Rice or Rye sequences. Use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 

e-value cutoff: 

Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon