CerealsDB

iSelect SNP Summary Information

Summary information for the SNP BS00112455 is listed below:

Map location in various crosses

Avalon X Cadenza
Savannah X Rialto
Cross 1
Cross 2	2B
Cross 3
Cross 4
Cross 5
Cross 6
Deletion lines
IWGSC	2DL
BLAST	2B
9K iSelect array

Consensus Chromosome: 2B

Sequence

CTGTATGGATGGGTACAACTGAGATGTCTAGGGCAGAGTTCCGCTCGTTC[A/G]TTCAAACTCTTGCAGGAAAGTACAATGGGAATACATATCATTTGATTTCA

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BLAST sequence

To BLAST the above sequence against our SNP database click on the 'Queryi SNP databse' button below. You may select an e-value cut-off for this search.

e-value cutoff  10 1 0.1 0.01 0.001 0.0001 e-5 e-10 e-20 e-50 e-100 e-150 e-250

Alternatively, you may perform a BLASTN against Brachypodium, Rice or Rye sequences. Use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters

Database:  Brachypodia distachyon Oryza sativa Rye Rye singletons (raw data)

e-value cutoff:  10 1 0.1 0.01 0.001 0.0001 e-5 e-10 e-20 e-50 e-100 e-150 e-250

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Based at the University of Bristol with support from BBSRC.