Contig Sequence
Contig name: BC000036144 (Nimblegen Contig name: CONTIG89110)
Contains SNP BS00102709 at position 957 (ambiguity code highlighted in red in the sequence below).
Note: The ambiguity code Y, highlighted in red, translates to C or T).
The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.
All SNPs on contig
There are 9 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped in a particular cross, the corresponding fields in the table are left blank.
SNPs id | Position | Map Location AxC | cM | Map Location SxR | cM | Map Location SxO | cM |
BS00102706 | 412 | ||||||
BS00102707 | 576 | ||||||
BS00102708 | 738 | ||||||
BS00102709 | 957 | 2A | 133.52 | ||||
BS00102701 | 1071 | ||||||
BS00102702 | 1173 | ||||||
BS00102703 | 1251 | ||||||
BS00102704 | 1275 | ||||||
BS00102705 | 1287 |
BLAST information
To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.
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Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.
Based at the University of Bristol with support from BBSRC.