Contig Sequence
Contig name: BC000012243 (Nimblegen Contig name: CONTIG09314)
Contains SNP BS00024099 at position 513 (ambiguity code highlighted in red in the sequence below).
Note: The ambiguity code K, highlighted in red, translates to G or T).
The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.
All SNPs on contig
There are 6 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped in a particular cross, the corresponding fields in the table are left blank.
SNPs id | Position | Map Location AxC | cM | Map Location SxR | cM | Map Location SxO | cM |
BS00024095 | 158 | 3B | 23.46 | ||||
BS00024096 | 197 | ||||||
BS00024097 | 282 | 3B | 21.33 | ||||
BS00024098 | 324 | 1B | 53.51 | ||||
BS00024099 | 513 | 1D | 46.79 | ||||
BS00024100 | 519 | 2B | 30.51 |
BLAST information
To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.
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Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.
Based at the University of Bristol with support from BBSRC.