Contig Sequence
Contig name: BC000005736 (Nimblegen Contig name: CONTIG89961)
Contains SNP BS00010610 at position 390 (ambiguity code highlighted in red in the sequence below).
Note: The ambiguity code Y, highlighted in red, translates to C or T).
The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.
All SNPs on contig
There are 9 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped in a particular cross, the corresponding fields in the table are left blank.
SNPs id | Position | Map Location AxC | cM | Map Location SxR | cM | Map Location SxO | cM |
BS00010610 | 390 | 1B | 141.32 | ||||
BS00011056 | 444 | ||||||
BS00011052 | 458 | ||||||
BS00011715 | 512 | ||||||
BS00011924 | 734 | ||||||
BS00011346 | 792 | ||||||
BS00009709 | 855 | 1B | 141.32 | 1B | 69.06 | ||
BS00009360 | 881 | ||||||
BS00012060 | 928 |
BLAST information
To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.
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Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.
Based at the University of Bristol with support from BBSRC.