Contig Sequence
Contig name: BC000002002 (Nimblegen Contig name: CONTIG46177)
Contains SNP BS00003563 at position 453 (ambiguity code highlighted in red in the sequence below).
Note: The ambiguity code S, highlighted in red, translates to G or C).
The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.
All SNPs on contig
There are 9 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped in a particular cross, the corresponding fields in the table are left blank.
SNPs id | Position | Map Location AxC | cM | Map Location SxR | cM | Map Location SxO | cM |
BS00008052 | 332 | ||||||
BS00008053 | 360 | ||||||
BS00004193 | 400 | ||||||
BS00010216 | 401 | 4A | 44.70 | ||||
BS00003752 | 427 | ||||||
BS00004097 | 427 | ||||||
BS00012688 | 452 | ||||||
BS00003563 | 453 | 5D2 | 108.05 | 5D | 183.01 | ||
BS00003937 | 453 |
BLAST information
To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.
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Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.
Based at the University of Bristol with support from BBSRC.