Contig Sequence

Contig name: BC000034811 (Nimblegen Contig name: CONTIG68643)

Contains SNP BS00096149 at position 755 (ambiguity code highlighted in red in the sequence below).

ATCATTCTATCCCATGCACCAAGGAGAGCGCTAACACAACTAAGGTCCAGTCAAGTGAGCACAGAGTTCAGTCGATTGGAAATGAATCACGGTCTTGCAGTGATACTTCAACTTCGCCTCTTTCTTCCTATGGACAAGGAGACGGAAGTTATTTACAGGCTGAACCTTTGTCACCAACCAAGGCCCTGCGTGCAGCAATGCTTAAGAGGCGTTTTGCTGGAACGATTGTGAAGGCACAGCAGAAGGCACTTCTGGACCATGGGCAGCAAATAGACCCTGCAAAATTACAGTTGGAAAAGGAGAGGCTGGAAAAAAGGCAGCAAGAAGAGAAAGAAAGGATTGAGGCCCAGGTGAAGGCTGCTGAAGCTGCTGCACAGTTCAAGTTAGATGAAGAACTAAGGAAGAAGAGGGAGCGAGAAAGAGAGGCAGCACGGCTGGCACTACACATGATGAAGAAGACTGTCGACATTGACAACAGCGACTTCCTAAAGGACCTGGAAAACATCAGCAAAAAGTGGGAGCTGAACCCTCCTGCCAAGCTAATCGTGGATTTCGTCGACGGGATGGAGCTCCCACCTGGCCTCGGAAGCCCGCTGGAGAGGCTGGGGCTCTTCATGAAGAGAGACATGGAAGAAGAGGTCGAAGATGAAATGGAGGACTCACCAACCTCCGTGGATGTCGACAGCGTATCACCACCCTCCGTGGATGCCGACAGTGTATCGCCACCCTCTGTTGACGTCAACAGCATGTTACC[R]CCCGCCGTCGATATGGAAATCGACGGGGAGGAAGGGGAGATTGGCTGCTGTGGGTAGCATTCGTTTTTCTTGTGAACTTTGTTTCGCATACGTATTGTGTACACCAACACGATCGTACATCGTGGTTATAAGGTTACGATGTGATTCTGCCCCGTGAGCAGGCTATGTTGACATAAGCGGCTGAGTGCACTGTAACTGTTGTGGTATTCAGAGTGAGTTTCTCGTACGAATGTTCTGTAAAACAATTGGAGAAAAAGAGGNNNNNNNGATATAGTAGT

Note: The ambiguity code R, highlighted in red, translates to A or G).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.



All SNPs on contig

There are 17 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped, the corresponding fields in the table are left blank and, if available, a putaive location for the contig, based on our extensive NGS of various wheat lines, is given below the table.

SNPs id Position Map Location AxC cM Map Location SxR cM
BS00096140 461
BS00096141 605
BS00096142 660
BS00096143 716
BS00096144 717
BS00096145 722
BS00096146 731
BS00096147 737
BS00096148 741
BS00096149 755
BS00096150 797
BS00096151 818
BS00096152 849
BS00096153 910
BS00096154 915
BS00096155 924
BS00096156 937

This contig has been mapped provisionally to chromosome 7BL.




BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

e-value cutoff 


Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button.   At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries.   However, this site is actively being worked on and we hope to be able to add additional libraries.

BLAST input parameters Database: 


e-value cutoff: 








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