Functional Genomics Group publications
- Alexandra M. Przewleslik-Allen, Paul A. Wilkinson, Amanda J. Burridge, Mark O. Winfield et al. (2021) The role of gene flow and chromosomal instability in shaping the bread wheat genome Nature Plants
- Helen Harper, Amanda J Burridge, Mark Winfield, Adam Finn, Andrew D Davidson, David Matthews, Stephanie Hutchings, Barry Vipond, Nisha Jain, Keith J Edwards, Gary Barker. (2021) Detecting SARS_CoV-2 variants with SNP genotyping PLOS ONE
- Mark Winfield, Amanda Burridge, Matthew Ordidge, Helen Harper, Paul Wilkinson, Danny Thorogood, Liz Copas, Keith Edwards & Gary Barker (2020) Development of a minimal KASP marker panel for distinguishing genotypes in apple collections PLOS ONE
- Paul A. Wilkinson, Alexandra M. Allen, Simon Tyrell, Luzie U. Wingen, Xingdong Bian, Mark O. Winfield, Amanda Burridge, DAniel S. Shaw, Jan Zaucha, Simon Griffiths, Robet P. Davey, Keith J. Edwards & Gary L.A. Barker (2020) CerealsDB - new tools for the analysis of the wheat genome: update 2020 Database
- Harper, H., Winfield, MO, Copas, L, Przewieslik-Allen, AM, Barker, GLA, Burridge, A, Hughes, BR, Davies, L & Edwards, KJ (2019) The Long Ashton Legacy: characterising United Kingdom West Country cider apples using a genotyping by targeted sequencing approach Plants, People, Planet
- Przewieslik-Allen, AM, Burridge, AJ, Wilkinson, PA, Winfield, MO, Shaw, DS, McAusland, L, King, J, King, IP, Edwards, KJ & Barker, GL, (2019) Developing a high-throughput SNP-based marker system to facilitate the introgression of traits from Aegilops species into bread wheat (Triticum aestivum). Frontiers in Plant Science
- Zhang, Z, Hua, L, Gupta, A, Tricoli, D, Edwards, KJ, Yang, B & Li, W, (2019) Development of an Agrobacterium-delivered CRISPR/Cas9 system for wheat genome editing. Plant Biotechnology Journal
- King, J, Grewal, S, Yang, C-Y, Edwards, SH, Scholefield, D, Ashling, S, Harper, JA, Allen, AM, Edwards, KJ, Burridge, AJ & King, IP, (2018) Introgression of Aegilops speltoides segements in Triticum aestivum and the effect of the gametocidal genes. Annals of Botany
- Burridge, AJ, Wilkinson, PA, Winfield, MO, Barker, GLA, Allen, AM, Coghill, JA, Waterfall, C and Edwards, KJ (2017), Conversion of array-based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (Triticum aestivum). Plant Biotechnology Journal.
- Winfield, MO, Allen, AM, Wilkinson, PA, Burridge, AJ, Barker, GLA, Coghill, J, Waterfall, C, Wingen, LU, Griffiths, S and Edwards, KJ (2017), High-density genotyping of the AE Watkins Collection of hexaploid landraces identifies a large molecular diversity compared to elite bread wheat. Plant Biotechnology Journal.
- Allen, AM, Winfield, MO, Burridge, AJ, Downie, RC, Benbow, HR, Barker, GL, Wilkinson, PA, Coghill, J, Waterfall, C, Davassi, A, Scopes, G, Pirani, A, Webster, T, Brew, F, Bloor, C, Griffiths, S, Bentley, AR, Alda, M, Jack, P, Phillips, AL, Edwards, KJ, 2016, Characterisation of a Wheat Breeders' Array suitable for high throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivium). Plant Biotechnology Journal.
- King, J, Grewal, S, Yang, Hubbart, S, Scholefield, D, Ashling, S, Edwards, K, Przewieslik-Allen, S, Burridge, A, Bloor, C, Davassi, A, Silva, Gd, Chalmers, K & King, I, 2016, A step change in the transfer of interspecific variation into wheat from Amblyopyrum muticum Plant Biotechnology Journal.
- Wilkinson, PA, Winfield, MO, Barker, GLA, Tyrrell, S, Bian, X, Przewieslik-Allen, S, Burridge, A, Coghill, J, Waterfall, C, Caccamo, M, Davey, R & Edwards, K, 2016, CerealsDB 3.0: Expansion of resources and data integration. BMC Bioinformatics, vol 17.
- Winfield, M., Allen, A.M., burridge, A.J., Barker, G.L.A., Benbow, H.R., Wilkinson, P.A., Coghill, J., Waterfall, C., Davassi, A., Scopes, G., Pirani, A., Webster, t., Brew,F., Bloor, C., King, J., West, C., Griffiths, S., King, I., Bentley, A.R. and Edwards, K.J. 2015. High density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool. Plant Biotechnology Journal .
- Shen, L, Sun, P, Bonnell, VC, Edwards, KJ, Hetherington, AM, McAinsh, MR & Roberts, MR, 2015, Measuring stress signaling responses of stomata in isolated epidermis of graminaceous species. Frontiers in Plant Science, vol 6.
- Edwards, K, 2015, Standards for plant synthetic biology: a common syntax for exchange of DNA parts. New Phytologist.
- Wang, S, Wong, D, Forrest, K, Allen, A, Chao, S, Huang, BE, Maccaferri, M, Salvi, S, Milner, SG, Cattivelli, L, Mastrangelo, AM, Whan, A, Stephen, S, Barker, G, Wieseke, R, Plieske, J, Lillemo, M, Mather, D, Appels, R, Dolferus, R, Brown-Guedira, G, Korol, A, Akhunova, AR, Feuillet, C, Salse, J, Morgante, M, Pozniak, C, Luo, MC, Dvorak, J, Morell, M, Dubcovsky, J, Ganal, M, Tuberosa, R, Lawley, C, Mikoulitch, I, Cavanagh, C, Edwards, KJ, Hayden, M & Akhunov, E, 2014, Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnology Journal, vol 12., pp. 787-796
- Steinberg, F., Gallon, M., Winfield, M., Thomas, E., Bell, A.J., Heesom, K.J., Travare, J.M. and Cullen, P.J. 2013. A global analysis of SNX27-retromer assembly and cargo specificity reveals a function in glucose and metal ion transport. Nature Cell Biology 15: 446-448.
- Allen, A.M, Barker, G.L.A., Wilkinson, P., Burridge, A., Winfield, M., Coghill, J., Uauy, C., Griffiths, S., Jack, P., Berry, S., Werner, P., Melichar, J.P.E., McDougall, J., Gwilliam, R., Robinson, P. and Edwards, K.J. 2012. Discovery and development of exome-based, co-dominant single nucleotide polymorphism markers in hexaploid wheat (Triticum aestivum L.). Plant Biotechnology Journal 11(3): 279-295.
- Brenchley, R., Spannagl, M., Pfeiffer, M., Barker, G.L.A., D'Amore, R., Allen, A.M., McKenzie, N., Kramer, M., Kerhornou, A., Bolser, D. Kay, S., Waite, D., Trick, M, Bancroft, I., Gu, Y., Huo, N., Luo, M-C., Sehgal, S., Gill., B., Kianian, S., Anderson, O., Kersey, P., Dvorak, J., McCombie, W.R., Hall, A., Mayer, M.F.X., Hall, N., Edwards, K.J., Bevan, M.W. and Hall, N. 2012. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 491: 705-710.
- Wilkinson, P.A., Winfield, M.O., Barker, G.L.A., Allen, A.M., Burridge, A., Coghill, J.A., and Edwards, K.J. 2012. CerealsDB 2.0: an integrated resource for plant breeders and scientists. BMC Bioinformatics 13: 219.
- Winfield, M.O., Wilkinson, P.A., Allen, A.M., Barker, G.L.A., Coghill, J.A., Burridge, A., Hall, A., Brenchley, R.C., D'Amore, R., Hall, N., Bevan, M.W., Todd, R., Gerhardt, D.J., Jeddeloh, J.A. and Edwards, K.J. 2012. Targeted re-sequencing of the allohexaploid wheat exome. Plant Biotechnology Journal 10(6): 733-742.
- Allen, A.M, Barker, G.L.A., Berry, S.T., Coghill, J.A., Gwilliam, R., Kirby, S., Robinson, P., Brenchley, R.C., D'Amore, R., McKenzie, N., Hall, A., Bevan, M., Hall, N. and Edwards, K.J. 2011. Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.). Plant Biotechnology Journal 9(9): 1086-1099.
- Grierson, C.S., Barnes, S. R., Chase, M.W., Clarke, M., Grierson, D., Edwards, K.J., Jellis, G.J., Jones, J.D., Knapp, S., Oldroyd, G., Poppy, G., Temple, P., Williams, R. and Bastow, R. 2011. One hundred important questions facing plant science research. New Phytologist 192(1): 6-12.
- Hegarty, M.J., Batstone, T.E., Barker, G.L.A., Edwards, K.J., Abbott, R.J. and Hiscock, S.J. 2011. Nonadditive changes to cytosine methylation as a consequence of hybridization and genome duplication in Senecio. Molecular Ecology 20(1): 105-113.
2010
- Pethica, R., Barker, G., Kovacs, T. and Gough, J. 2010. TreeVector: Scalable, Interactive, Phylogenetic Trees for the Web. PLoS ONE 5(1): e8934.
- Postel, U., Thompson, F., Barker, G., Viney, M and Morris, S. 2010. Migration-related changes in gene expression in leg muscle of the Christmas Island red crab Gecarcoidea natalis: seasonal preparation for long-distance walking. Journal of Experimental Biology 213: 1740-1750
- Winfield, M.O., Lu, C., Wilson, I.D., Coghill, J.A. and Edwards, K.J. 2010. Plant responses to cold: transcriptome analysis of wheat. Plant Biotechnology Journal 8: 749-771.
- Zeale, M.R.K., Butlin, R.K., Barker, G., Lees, D.C. and Jones, G. 2010. Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces. Molecular Ecology Resources no. doi: 10.1111/j.1755-0998.2010.02920.x
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