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cluster_1_contig_8

putative SNPs, mean score 0.00

Key to sequences:


A Chinese_Spring_BQ280469
B Chinese_Spring_BQ280528
C Chinese_Spring_BQ280529
D Chinese_Spring_BQ280590
E Chinese_Spring_BQ280609
F Chinese_Spring_BQ280622
G Chinese_Spring_BQ280626
H Chinese_Spring_BQ280680
I Chinese_Spring_BQ280683
J Chinese_Spring_BQ280747
K Chinese_Spring_BQ280808
L Chinese_Spring_BQ280831
M Chinese_Spring_BQ280870
N Chinese_Spring_BQ280875
O Chinese_Spring_BQ280880
P Chinese_Spring_BQ280949
Q Chinese_Spring_BQ280988
R Chinese_Spring_BQ281202
S Chinese_Spring_BQ281279
T Chinese_Spring_BQ281325
U Chinese_Spring_BQ281369
V Chinese_Spring_BQ281371
W Chinese_Spring_BQ281391
X Chinese_Spring_BQ281418
Y Chinese_Spring_BQ281447
Z Chinese_Spring_BQ281448
a Chinese_Spring_BQ281465
b Chinese_Spring_BQ281470
c Chinese_Spring_BQ281525
d Chinese_Spring_BQ281597
e Chinese_Spring_BQ281623
f Chinese_Spring_BQ281635
g Chinese_Spring_BQ281644
h Chinese_Spring_BQ281708
i Chinese_Spring_BQ281766
j Chinese_Spring_BQ281822
k Chinese_Spring_BQ281840
l Chinese_Spring_BQ281896
m Chinese_Spring_BQ281919
n Chinese_Spring_BQ281940
o Chinese_Spring_BQ281984
p Chinese_Spring_BQ282014
q Chinese_Spring_BQ282103
r Chinese_Spring_BQ282111
s Chinese_Spring_BQ282114
t Chinese_Spring_BQ282125
u Chinese_Spring_BQ282134
v Chinese_Spring_BQ282158
w Chinese_Spring_BQ282183
x Chinese_Spring_BQ282226
y Chinese_Spring_BQ282302
z Chinese_Spring_BQ282320
A Chinese_Spring_BQ282334
B Chinese_Spring_BQ282347
C Chinese_Spring_BQ282357
D Chinese_Spring_BQ282393
E Chinese_Spring_BQ282403
F Chinese_Spring_BQ282412
G Chinese_Spring_BQ282415
H Chinese_Spring_BQ282419
I Chinese_Spring_BQ282427
J Chinese_Spring_BQ282441
K Chinese_Spring_BQ282456
L Chinese_Spring_BQ282477
M Chinese_Spring_BQ282485
N Chinese_Spring_BQ282492
O Chinese_Spring_BQ282502
P Chinese_Spring_BQ282524
Q Chinese_Spring_BQ282529
R Chinese_Spring_BQ282532
S Chinese_Spring_BQ282551
T Chinese_Spring_BQ282606
U Chinese_Spring_BQ282697
V Chinese_Spring_BQ282724
W Chinese_Spring_BQ282742
X Chinese_Spring_BQ282796
Y Chinese_Spring_BQ282809
Z Chinese_Spring_BQ282812
a Chinese_Spring_BQ282846
b Chinese_Spring_BQ282866
c Chinese_Spring_BQ282877
d Chinese_Spring_BQ282880
e Chinese_Spring_BQ282882
f Chinese_Spring_BQ282905
g Chinese_Spring_BQ282952
h Chinese_Spring_BQ282989
i Chinese_Spring_BQ282993
j Chinese_Spring_BQ283014
k Chinese_Spring_BQ283030
l Chinese_Spring_BQ283057
m Chinese_Spring_BQ283080
n Chinese_Spring_BQ283101
o Chinese_Spring_BQ283118
p Chinese_Spring_BQ283134
q Chinese_Spring_BQ283155
r Chinese_Spring_BQ283175
s Chinese_Spring_BQ283208
t Chinese_Spring_BQ283229
u Chinese_Spring_BQ283236
v Chinese_Spring_BQ283255
w Chinese_Spring_BQ283282
x Chinese_Spring_BQ283283
y Chinese_Spring_BQ283285
z Chinese_Spring_BQ283300
A Chinese_Spring_BQ283315
B Chinese_Spring_BQ283355
C Chinese_Spring_BQ283360
D Chinese_Spring_BQ283421
E Chinese_Spring_BQ283447
F Chinese_Spring_BQ283519
G Chinese_Spring_BQ283553
H Chinese_Spring_BQ283561
I Chinese_Spring_BQ283567
J Chinese_Spring_BQ283577
K Chinese_Spring_BQ283596
L Chinese_Spring_BQ283601
M Chinese_Spring_BQ283604
N Chinese_Spring_CA484122
O Chinese_Spring_CA484125
P Chinese_Spring_CA484150
Q Chinese_Spring_CA484158
R Chinese_Spring_CA484172
S Chinese_Spring_CA484219
T Chinese_Spring_CA484224
U Chinese_Spring_CA484229
V Chinese_Spring_CA484231
W Chinese_Spring_CA484242
X Chinese_Spring_CA484250
Y Chinese_Spring_CA484276
Z Chinese_Spring_CA484283
a Chinese_Spring_CA484336
b Chinese_Spring_CA484342
c Chinese_Spring_CA484346
d Chinese_Spring_CA484354
e Chinese_Spring_CA484364
f Chinese_Spring_CA484365
g Chinese_Spring_CA484413
h Chinese_Spring_CA484417
i Chinese_Spring_CA484419
j Chinese_Spring_CA484422
k Chinese_Spring_CA484433
l Chinese_Spring_CA484445
m Chinese_Spring_CA484447
n Chinese_Spring_CA484470
o Chinese_Spring_CA484477
p Chinese_Spring_CA484484
q Chinese_Spring_CA484560
r Chinese_Spring_CA484581
s Chinese_Spring_CA484586
t Chinese_Spring_CA484596
u Chinese_Spring_CA484650
v Chinese_Spring_CA484653
w Chinese_Spring_CA484660
x Chinese_Spring_CA484685
y Chinese_Spring_CA484701
z Chinese_Spring_CA484727
A Chinese_Spring_CA484730
B Chinese_Spring_CA484742
C Chinese_Spring_CA484744
D Chinese_Spring_CA484763
E Chinese_Spring_CA484769
F Chinese_Spring_CA484778
G Chinese_Spring_CA484781
H Chinese_Spring_CA484783
I Chinese_Spring_CA484832
J Chinese_Spring_CA484833
K Chinese_Spring_CA484846
L Chinese_Spring_CA484864
M Chinese_Spring_CA484883
N Chinese_Spring_CA484898
O Chinese_Spring_CA484932
P Chinese_Spring_CA484936
Q Chinese_Spring_CA484961
R Chinese_Spring_CA484976
S Chinese_Spring_CA484977
T Chinese_Spring_CA485021
U Chinese_Spring_CA485022
V Chinese_Spring_CA485029
W Chinese_Spring_CA485051
X Chinese_Spring_CA485055
Y Chinese_Spring_CA485062
Z Chinese_Spring_CA485078
a Chinese_Spring_CA485106
b Chinese_Spring_CA485156
c Chinese_Spring_CA485179
d Chinese_Spring_CA485189
e Chinese_Spring_CA485209
f Chinese_Spring_CA485339
g Chinese_Spring_CA485349
h Chinese_Spring_CA485351
i Chinese_Spring_CA485352
j Chinese_Spring_CA485365
k Chinese_Spring_CA485369
l Chinese_Spring_CA485406
m Chinese_Spring_CA485411
n Chinese_Spring_CA485416
o Chinese_Spring_CA485417
p Chinese_Spring_CA485452
q Chinese_Spring_CA485465
r Chinese_Spring_CA485469
s Chinese_Spring_CA485532
t Chinese_Spring_CA485541
u Chinese_Spring_CA485542
v Chinese_Spring_CA485548
w Chinese_Spring_CA485574
x Chinese_Spring_CA485613
y Chinese_Spring_CA485621
z Chinese_Spring_CA485636
A Chinese_Spring_CA485638
B Chinese_Spring_CA485646
C Chinese_Spring_CA485653
D Chinese_Spring_CA485689
E Chinese_Spring_CA485690
F Chinese_Spring_CA485733
G Chinese_Spring_CA485750
H Chinese_Spring_CA485752
I Chinese_Spring_CA485798
J Chinese_Spring_CA485808
K Chinese_Spring_CA485810
L Chinese_Spring_CA485813
M Chinese_Spring_CA485828
N Chinese_Spring_CA485833
O Chinese_Spring_CA485842
P Chinese_Spring_CA485866
Q Chinese_Spring_CA485874
R Chinese_Spring_CA485880
S Chinese_Spring_CA485893
T Chinese_Spring_CA485897
U Chinese_Spring_CA485902
V Chinese_Spring_CA485907
W Chinese_Spring_CA485915
X Chinese_Spring_CA485918
Y Chinese_Spring_CA485933
Z Chinese_Spring_CA485942
a Chinese_Spring_CA485946
b Chinese_Spring_CA485955
c Chinese_Spring_CA485976
d Chinese_Spring_CA485986
e Chinese_Spring_CA485999
f Chinese_Spring_CA486028
g Chinese_Spring_CA486032
h Chinese_Spring_CA486052
i Chinese_Spring_CA486062
j Chinese_Spring_CA486070
k Chinese_Spring_CA486073
l Chinese_Spring_CA486074
m Chinese_Spring_CA486080
n Chinese_Spring_CA486082
o Chinese_Spring_CA486099
p Chinese_Spring_CA486165
q Chinese_Spring_CA486183
r Chinese_Spring_CA486240
s Chinese_Spring_CA486251
t Chinese_Spring_CA486332
u Chinese_Spring_CA486361
v Chinese_Spring_CA486379
w Chinese_Spring_CA486389
x Chinese_Spring_CA486413
y Chinese_Spring_CA486415
z Chinese_Spring_CA486431
A Chinese_Spring_CA486464
B Chinese_Spring_CA486466
C Chinese_Spring_CA486485
D Chinese_Spring_CA486493
E Chinese_Spring_CA486544
F Chinese_Spring_CA486558
G Chinese_Spring_CA486560
H Chinese_Spring_CA486581
I Chinese_Spring_CA486584
J Chinese_Spring_CA486612
K Chinese_Spring_CA486680
L Chinese_Spring_CA486687
M Chinese_Spring_CA486701
N Chinese_Spring_CA486754
O Chinese_Spring_CA486759
P Chinese_Spring_CA486781
Q Chinese_Spring_CA486796
R Chinese_Spring_CA486816
S Chinese_Spring_CA486845
T Chinese_Spring_CA486887
U Chinese_Spring_CA486902
V Chinese_Spring_CA486907
W Chinese_Spring_CA486949
X Chinese_Spring_CA486964
Y Chinese_Spring_CA486970
Z Chinese_Spring_CA487030
a Chinese_Spring_CA487046
b Chinese_Spring_CA487076
c Chinese_Spring_CA487095
d Chinese_Spring_CA487106
e Chinese_Spring_CA487108
f Chinese_Spring_CA487119
g Chinese_Spring_CA502590
h Chinese_Spring_CA502617
i Chinese_Spring_CA502624
j Chinese_Spring_CA502626
k Chinese_Spring_CA502627
l Chinese_Spring_CA502629
m Chinese_Spring_CA502681

 
Summary of SNPs:  

base
ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklm
Min. informativeCosegregationWeighted
cosegregation (%)
37
.GG.GGGGG..TGG..GGGGGGGGGG.GGTGGG.GTGGGGGGG....G..GGGG..G.GGGGG..G.GGG..G..G..GG......G...GG..G.GGGGGGGGGGGGGGGGGG.GGGG......G....GGG...GGG.G.G..........GG.G.....GGGGGG...........G....G.G..G..........G.GG.G.......G.....G...G....G....GGGGGG.G.....G....G..GGGGG.G...G.GGG..GGGG.G.........G......G....G
3
8/45
8 
38
GGG.GGGGG..GGG..GGGGGGGGGG.GGGGGGGGGGGGGGGG....G..GGGG.TGTGGGGG..GGGGG..G..G..GG......G...GG..G.GGGGGGGGGGGGGGGGGG.GGGG......GGGG.GGG..GGGG.G.G.......G..GGGG..G.GGGGGGGGG....G.G..G..G.GGG.GGG.GG.GG...GGGG.G.......G.....GG..G....G....GGGGGGGG.G.G.G....GG.GGGGGGG.G.G.GGG..GGGG.G.G..G..G.G.GGGG.G....G
2
9/45
12 
39
CCC.CCCCC..CCC..CCCCCCCCCCCCCCCCCCCCCCCCCCC....C..CCCC.CCCCTCCCC.CCTCCC.C..C..CC......C...CC..C.CCCCCCCCCCCCCCCCCC.CCCC......CCCC.CCC.CCCCC.C.C.......C..CCCC..C.CCCCCCCCCC.CCC.C..C..C.TCC.CCCCCC.CCCC.CCCC.CCC...C.C...C.CCCCCCCC.CCC..CCCCCCCC.CCC.CC.C.CC.CCCCCCC.C.C.CCC..CCCC.C.CC.C..CCC.CCCC.T....C
4
9/45
14 
48
AAA.AA-AA..AAA.AAAAAAAAAAAAAAAAAAAAAAAAAAAA....-..AAAA-A-AAA-AAA.--AAA-.A..A..AA......A...AA..A.AAAAA-A-AAAAAAAAAA.-AAA..A.AAAAAA.-AA.AAAAAAA.A.......-..AAAAA.-AAAAAA-AAAA.AAA.A..A..A.AAA.AAAAA-.-AAA.-AAA.-AA.-AA-AA.AA.A-AAAA-A.---..AA-AAAAA.A-A.--.A.AA.AA--AA-.A.AA---.AAA--.A.-A.A..AAA.AAAAAAA...A
39
2/45
3 
50
GGG.GGGGG..GGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGG.GGGGGG.-GG-..G-...G.GG...--..-.GGGGGGGGGGGGGGGGGG.GGGGG.GGGGGGGGGGGG.GGGGGGG.G.......GG.GGGGG.GGGGGGGGGGGGGGGG.GG.G..GGGGGGGGGGGGGGGGG.GGGG.GGG.GGGGGG.GG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGG.GGGGGGG.G.GGGGGGGGGGG.G.GG.GGGGGG.GGGGGGG.G.G
6
9/45
17 
55
AAA.AAAAA..AAA.AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAAAAAAA.AAAAAA.AAAA.AAAA.AA.AA...AA..A.AAAAAAAAAAAAAAAAAA.AAAAA.A-AAAAAAAAAA.AAAAAAA.A.......A-.AAAAA.AAAAAAAAAAAAAAAA.A-.A..A--AAAAAAAAAAAAAA.AAAA.AAA.AAAAAA.AA.AAAAAAAAAAAAAAAAAAAAAA-AAAAAA.AAAA.AAAAAAA.A.AAAAAAAAAAA.AAAA.AAAAAA.AAAAAAA.A.A
7
8/45
15 
63
CCC.CCCCC..CCC.CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC.CCCCCC.CCCC.CCCC.CC.CC...CC..C.CCCCCCCCCCCCCCCCCC.CCCCC.CCCCCCCCCCCC.CCCCCCC.C.......CC.CCCCC.CCCCCCCCCCCCCCCC.CC.C.CCCCCCCCCCCCCCCCCC.CCCC.CCC.CCCCCC.CC.CCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCC.CCCCCCC.C.CCCCCCCCCCCCCCCT.TCCCTC.TCCTCCC.CCC
6
2/45
4 
64
CCC.CCCCC..CCC.CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC.CCCCCC.CCCC.CCCC.CC.CC...CC..C.CCCCCCCCCCCCCCCCCC.CCCCC.CCCCCCCCCCCCTCCCCCCC.C.T.....CC.CCCCC.CCCCCCCCCCCCCCCC.CC.C.CCCCCCCCCCCCCCCCCC.CCCC.CCC.CCCCCT.CC.CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC.CCCCCCC.C.CCCCCCCCCCCCCCCC.CCCCCC.CCCCCCC.CCC
3
8/45
15 
66
GGG.GGGGG..GGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGG.GGGG.GGGG.GG.GG...GG..G.GGGGGGGGGGGGGGGGGG.GGGGG.GGGGGGGGGGGGGGGGGGGG.GGG..T.GGG.GGGGG.GGGGGGGGGGGGGGGG.GG.G.GGGGGGGGGGGGGGGGGG.GGGG.GTG.GGGGGG.GG.GGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGG.G.GGGGGGGGGGGGGGGGGGGGG