CerealsDB

Contig Sequence

Contig name: BC000036592 (Nimblegen Contig name: CONTIG92334)

Contains SNP BS00105939 at position 337 (ambiguity code highlighted in red in the sequence below).

GCTTGATGAGGATCTTGGAGATGGCTCTGAAGATAAGCAGGGGCTGTACACGTGGCAAGACCTATGTGTGCTTGTTCAGTCCAGCGACAGCGAGCTGCTGGAGGGGCTGAATTCCCTCTCGGCTGTCGAGATTGATGGGTTCTGGAGGACCGTGGATGTCGGTTCTGTGAACACGGTTCTGGACATGATTCTGCACAACTCTGTGTTGCATGATTGGCTGCTAAATGCTTTGCCAGAAAATGCTGTGCTATCTGTCATGGAAGCTGACGGTTTTACGCATAAGATTGTAGCTCATTGCCTCAGCAGATTCGGCACGAAGGTTGAGCAGGAAGCAGG[R]AGTTGTTGGAAGCTTGATGAGAGACTGGTCTGCTTGCAGTTTGCCCGAAGAGCACTCGCCGCAGGAAAGATGAAGCTCAACAACTTTATGGATAAATGGGAACGAAGCATCCCTTCAGGAATGCGTGCGGATCTTCAGATGCTTGAAGGGGAAGTGCTGTATGAAAGGCTTGGGGCTGAGACCTGGGTGCATGCTTTCAGTGTCGCCGATCTGCCGTTGACGCCAGCTGAGAGGTTTGCAGCACTATTCCGGGAGCGGCCAAGGTGGGAATGGAAAGACCTGCAGCCCTTCATCAGGGACCTGCGCGTACCTGGTGCGTCTTCAGAAGGGTTGCTGATCAAGTACACAAGAAGAACGCAACCAAGCGCTGATGCCGATCCTATTTTTACTGCTAGATAGATGATCAACCTACCCTGCTACAAAATCCATGTTATGGTTGTGGCCCTTGCCGCTGCTGGTAAACTGCTGGTGTTGCTGCATTTGATCTGGATATTGTAGACAACAGAAGATTGCCGTGGCAGCATTTCAGGCAAGCTACACATAGGCGATGACGCAAGAGGATTTCTTGTGCCATACAAAGTGTCTGATTCTGCTTTTGGCGCAGACAATTAAGTAATCTGAATTTCCTTTCAGTTTCTACTAGAGATGCAATATCTGTACCTGGGTGCACTGCACACTTGTTGCACATTTACTATATATTTTGTATTTCAGCATGTAAGCTCGGTTCTAGCTAGTTATGTTTTCCAGATGTTGCCTT

Note: The ambiguity code R, highlighted in red, translates to A or G).

The highlighted SNP has not been mapped. Any other SNPs on the same contig are reported in the table below.

All SNPs on contig

There are 21 putative SNPs on this contig. If mapping information obtained from varietal crosses is available, it is shown in the table. When the SNP has NOT been mapped in a particular cross, the corresponding fields in the table are left blank.

SNPs id	Position	Map Location AxC	cM	Map Location SxR	cM	Map Location SxO	cM
BS00105938	33
BS00105940	34
BS00105943	38
BS00105949	56
BS00105930	111
BS00105931	127
BS00105932	166
BS00105933	214
BS00105934	290
BS00105935	292
BS00105936	295
BS00105937	325
BS00105939	337	5D2	70.34
BS00105941	343
BS00105942	348
BS00105944	385
BS00105945	391
BS00105946	395
BS00105947	396
BS00105948	400
BS00105950	577

BLAST information

To BLAST the above sequence against our SNP database click on the 'Query' button below. You may select an e-value cut-off for this search.

******************************************************************************************************************************************************

Alternatively, if you wish to perform a BLASTN search with this sequence, please use the drop-down fields below to select the parameters (database and e-value cutoff value) you wish to use and then click the grey 'BLAST' button. At present your search can only be performed against Brachypodium distachyon, rice ( Oryza sativa ) or rye ( Secale cereale ) libraries. However, this site is actively being worked on and we hope to be able to add additional libraries.

Based at the University of Bristol with support from BBSRC.

Maintained by Mark Winfield.