SNP report 1 next >

Switch to protein view   view contig cluster_1_contig_8 in fasta format

Frame: -1 Start:  End: 
Rice bin: 3.6 Wheat nulli bin(s):	
 
Cultivar and tissue source: 
SNP summary 
Full sequence
 
 
  1.................................................51................................................101...............................................151...............................................201...............................................251...............................................301...............................................351...............................................401...............................................451...............................................501...............................................551...............................................601...............................................
 
A
  .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A..............................................................................................................................
 
varietal?
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................n..............................................................................................................................
 
confident?
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................n..............................................................................................................................
 
Consensus
 
.L..L..G..I..L..K..Q..M..L..M..K..N..C..A..L..V..T..C..G..Y..N..*..Y..Y..V..D..C..P..L..C..V..M..C..A..I..E..S..E..R..N..N..R..K..E..D..N..K..V..R..S..*..T..A..C..V..Y..A..H..C..G..H..F..M..V..D..A..V..P..I..Y..G..V..G..P..M..Q..E..V..Q..M..Q..T..H..F..R..V..A..Y..S..P..P..S.*.P..P..S..*..D..S..D..S..S..S..S..S..H..G..D..H..D..H..G..E..G..H..K..K..E..K..K..K..K..K..D..K..K..E..K..H..D..K..D..K..H..E..G..S..K..E..G..H..E..G..T..I..K..D..K..I..K..E..V..I..G..E..K..H..E..G..D..K..K..H..H..E..E..A..K..K..H..E..E..K..K..H..E..D..D..K..K..H..D..G..G..M..H..L..T..E..E..I..K..H..I..I..G..S..M..T..T..V..Q..R..K..K..R..L..F..L..S..Q..F..A..L..*..A
  TAGCAGACCGATCAATTTCTGCATTAACATTTTATTGCAAGCTAGCACCGTGCAGCCATAATTTTAGTAGTACACATCACATGGCAAACAAACCATACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA*GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCCTTCTTGTGGTGCTCCTCGGCCTTCTTGTGCTCCTCCTTCTTGTGCTCGTCGTCCTTCTTGTGGTCGCCCCCCATGTGGAGCGTCTCCTCGATCTTGTGGATGATGCCAGACATGGTGGTGACTTGTCTTTTTTTTCTCAAGAAAAGGGATTGGAATGCTAGCTATGC
A1
EH408949,  cv: BTx623,
 
 T 
  .....................................................................................................CTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCCTTCTTGTGGTGCTCCTCGGCCTTCTTGTGCTCCTCCTTCTTGTGCTCGTCGTCCTTCTTGTGGTCGCCCCCCATGTGGAGCGTCTCCTCGATCTTGTGGATGATGCCAGACATGGTGGTGACTTGTCTTTTTTTTCTCAAGAAAAGGGATTGGAATGCTAGC
B1
EH410185,  cv: BTx623,
 
  
  TAGCAGACCGATCAATTTCTGCATTAACATTTTATTGCAAGCTAGCACCGTGCAGCCATAATTTTAGTAGTACACATCACATGGCAAACAAACCATACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCA
C1
CX606234,  cv: BTx623,
 
 C 
  ............................ATTTTATTGCAAGCTAGCACCGTGCAGCCATAATTTTAGTAGTACACATCACATGGCAAACAAACCATACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCCTTCTTGTGGTGCTCCTCGGCCTTCTTGTGCTCCTCCTTCTCGTGCTCGTCGTCCTTCTTGTGGTCGCCCCCCATGTGGAGCGTCTCCTCGATCTTGTGGATGATGCCAGACATGGTGGTGACTTGTCTTTTTTTTCTCA
K1
CX606140,  cv: BTx623,
 
 C 
  ......................................AAGCTAGCACCGTGCAGCCATAATTTTAGTAGTACACATCACATGGCAAACAAACCATACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCCTTCTTGTGGTGCTCCTCGGCCTTCTTGTGCTCCTCCTTCTCGTGCTCGTCGTCCTTCTTGTGGTCGCCCCCCATGTGGAGCGTCTCCTCGATCTTGTGGATGATGCCAGACATGGTGGTGACTTGTCTTTTTTTTCTCAAGAAAAGGGATTGGAATGCTAGCTATGC
L1
CF430975,  cv: BTx623,
 
  
  ...............TTTCTGCATTAACATTTTATTGCAAGCTAGCACCGTGCAGCCATAATTTTAGTAGTACACATCACATGGCAAACAAACCATACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCG
M1
CF073084,  cv: BTx623,
 
  
  ............................ATTTTATTGCAAGCTAGCACCGTGCAGCCATAATTTTAGTAGTACACATCACATGGCAAACAAACCATACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTG
N1
CF479946,  cv: BTx623,
 
  
  ..........................................................TAATTTTAGTAGTACACATCACATGGCAAACAAACCATACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGAAGGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTG
O1
CD429263,  cv: BTx623,
 
  
  ..............................TTTATTGCAAGCTAGCACCGTGCAGCCATAATTTTAGTAGTACACATCACATGGCAAACAAACCATACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCC
D1
AW924801,  
 
  
  ..........................................................................................................TCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCCTTCTTGTGGTGC
E1
AW924883,  
 
  
  ..............................................................................................................ACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCCTTCTTGTGGTGC
F1
AW680275,  
 
  
  ...............TTTCTGCATTAACATTTTATTGCAAGCTAACACCGTGCAGCCATAATTTTAGTAGTACACATCACATGGCAAACAAACCATACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATTTGTTCCACCTGCATCTGCGTATGGAAGC
G1
BE592683,  
 
 T 
  ....................................................................................................................................ATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATCACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGCAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCCTTCTTGTGGTGCTCCTCGGCCTTCTTGTGCTCCTCCTTCTTGTGCTCGTCGTCCTTCTTGTGGTCGCCCCCCATGTGGAGCGTCTCCTCGATCTTGTGGATGATGCCAGACATGGTGGTGACTTGTCTTTTTTTTC
H1
AW747437,  
 
 T 
  ...............................................................................................TACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCCTTCTTGTGGTGCTCCTCGGCCTTCTTGTGCTCCTCCTTCTTGTGCTCGTCGTCCTTCTTGTGGTCGCCCCCCATGTGGAGCGTCTCCTCGATCTTGTGGATGATGCCAGACATGGTGGTGACTTGTCTTTTTTTTC
I1
AW747477,  
 
 T 
  TAGCAGACCGATCAATTTCTGCATTAACATTTTATTGCAAGCTAGCACCGTGCAGCCATAATTTTAGTAGTACACATCACATGGCAAACAAACCATACATGCTATCTCTGACTCTCTGTTATTTCTTTTTTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGAGCTTCTTCTCCTTCTTCTTCTTCTTGACCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCCTTCTTGTGGTGCTCCTCGGCCTTCTTGTGCTCCTCCTTCTTGTGCTCGTCGTCCTTCTTGTGGTCGCCCCCCATGTGGAGCGTCTC
J1
AW924188,  
 
 T 
  .................................................................................................................................TTCATCGTTTTTCACCCTTGATTATGTAGCACATACATATGCATGACACCCGTGAAACATTACATCAGCAACTGGTATGTATCCTACTCCAGGCATCTGTTCCACCTGCATCTGCGTATGGAAGCGCACGGCGTAGCTAGGCGGCGA-GGGGGGAGATCAGTCGCTGTCGCTGCTGCTGCTGCTGTGGCCGTCATGGTCGTGGCCCTCGCCGTGCTTCTTCTCCTTCTTCTTCTTCTTGTCCTTCTTCTCCTTGTGGTCCTTGTCCTTGTGCTCGCCGGACTTCTCGCCGTGCTCGCCGGTGATCTTGTCCTTGATCTTCTCCACGATGCCCTCCTTGTGCTCCCCGTCCTTCTTGTGGTGCTCCTCGGCCTTCTTGTGCTCCTCCTTCTTGTGCTCGTCGTCCTTCTTGTGGTCGCCCCCCATGTGGAGCGTCTCCTCGATCTTGTGGATGATGCCAGACATGGTGGTGACTTGTCTTTTTTTTCTC
Haplotype info:
 

Top BLAST hit: