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gb|EAY85200.1| hypothetical protein OsI_006433 [Oryza sativa (indica
Frame: +1 Start: 1 End: 747
Rice bin: 2.2 Wheat nulli bin(s):	
 
Cultivar and tissue source: 
SNP summary 
Full sequence
 
 
  1.................................................51................................................101...............................................151...............................................201...............................................251...............................................301...............................................351...............................................401...............................................451...............................................501...............................................551...............................................601...............................................651...............................................701...............................................751...............................................801...............................................851...............................................
 
A
  ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A..............................................................................................................................................................................................................................................................................................................................................................................................
 
varietal?
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................y..............................................................................................................................................................................................................................................................................................................................................................................................
 
confident?
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................n..............................................................................................................................................................................................................................................................................................................................................................................................
 
Consensus
 
.L..Q..S..Q..N..D..Q..R..G..E..I..I..H..V..K..N..G..L..Q..L..L..K..P..T..L..T..Q..R..H..E..Q..E..Q..A..Q..Y..Q..E..V..Q..F..S..E..K..P..Q..T..S..S..R..W..N..G..L..E..E..N..L..C..T..I..K..T..R..L..N..I..E..N..P..T..R..A..D..S..Y..D..P..R..A..G..R..I..T..S..L..D..S..Q..K..F..P..I..L..N..I..I..Q..M..S..A..T..R..V..N..L..Y..Q..N..A..I..L..T..P..F..W..N..V..N..A..H..S..L..M..Y..V..I..*Q..G..R..A..Q..V..Q..V..V..S..N..L..G..K..T..V..F..D..G..V..L..R..P..E..Q..*L..L..I..I..P..Q..N..Y..V..V..L..K..K..A..Q..H..E..G..C..Q..Y..I..A..I..N..T*..T..L..M..P..L..*..A..T..L..Q..G..*..T..Q..Y..S..V..P..Y..Q..L..M..L.*.L..L..M..R..I..A..S..Q..G..K..R..L..E..D..S..R..T..T..R..G..D..E..Y..G..P..F..P..P..R..L..Q..Q..Q..I..Y..P..E..F.*.S..N..E..S..K..G..E..T..S..E..*..C..N..*..D..L..I..L..G..K..Q..N..K..G..V..I..G..S..M..S..L..R..K..M..S..I..K..I..I..V..I..T..I..R..L
  CTACAAAGCCAAAATGACCAAAGAGGAGAGATCATACATGTAAAGAATGGCCTTCAATTGCTGAAACCAACTTTGACACAGCGACACGAACAAGAACAAGCTCAATACCAAGAAGTCCAATTTAGTGAAAAACCACAAACATCTTCCCGATGGAACGGTTTAGAGGAGAACTTGTGCACAATCAAGACAAGGTTAAACATTGAAAATCCAACTCGTGCTGATTCATACGATCCACGTGCTGGAAGGATCACAAGTCTTGATAGTCAGAAGTTCCCTATCCTTAATATCATCCAAATGAGTGCTACTAGAGTAAATCTATACCAGAATGCTATTCTCACACCATTCTGGAATGTAAATGCTCATAGTTTGATGTATGTGATTC*AAGGGCGTGCTCAAGTTCAAGTCGTCAGTAACCTTGGAAAGACTGTGTTCGATGGTGTTCTTCGTCCAGAACAAC*TATTGATTATTCCACAAAACTATGTTGTCTTAAAGAAAGCACAACATGAAGGATGCCAATATATTGCAATCAACAC*AACGCTAATGCCTTTGTGAGCCACCTTGCAGGGGTAGACTCAGTATTCCGTGCCTTACCAGTTGATGTTG*TTGCTAATGCGTATCGCATCTCAAGGGAAGAGGCTCGAAGACTCAAGAACAACCAGGGGAGACGAGTATGGTCCATTCCCTCCCAGATTACAACAACAAATCTACCCAGAATTC*TCGAATGAATCTAAAGGCGAGACTTCAGAGTAATGTAACTAAGATCTAATATTAGGAAAGCAAAATAAAGGGGTAATTGGATCCATGTCATTGCGAAAAATGTCGATTAAGATAATTGTCATTACCATTCGTCTG
A1
CX111617,  cv: Minghui 63, tissue: whole plant, dev stage: whole-life-cycle,
 
 A 
  CTACAAAGCCAAAATGACCAAAGAGGAGAGATCATACATGTAAAGAATGGCCTTCAATTGCTGAAACCAACTTTGACACAGCGACACGAACAAGAACAAGCTCAATACCAAGAAGTCCAATTTAGTGAAAAACCACAAACATCTTCCCGATGGAACGGTTTAGAGGAGAACTTGTGCACAATCAAGACAAGGTTAAACATTGAAAATCCAACTCGTGCTGATTCATACGATCCACGTGCTGGAAGGATCACAAGTCTTGATAGTCAGAAGTTCCCTATCCTTAATATCATCCAAATGAGTGCTACTAGAGTAAATCTATACCAGAATGCTATTCTCACACCATTCTGGAATGTAAATGCTCATAGTTTGATGTATGTGATTC-AAGGGCGGGCTCAAGTTCAAGTCGTCAGTAACCTTGGAAAGACTGTGTTCGATGGTGTTCTTCGTCCAGGACAAC-TATTGATTATTCCACAAAACTATGTTG
B1
BI796723,  tissue: Endosperm, dev stage: 10 days after anthesis,
 
 C 
  ...........................................................................................................................................................................................................................................................................................................................CTATACCAGAATGCTATTCTCACACCATTCTGGAATGTAAATGCTCATAGTTTGATGTATGTGATTC-AAGGGCGTGCTCAAGTTCAAGTCGTCAGTAACCTTGGAAAGACTGTGTTCGATGGTGTTCTTCGTCCAGAACAAC-TATTGATTATTCCACCAAACTATGTTGTCTTAAAGAAAGCACAACATGAAGGATGCCAATATATTGCAATCAACACAAACGCTAATGCCTTTGTGAGCCACCTTGCAGGGGTAGACTCAGTATTCCGTGCCTTACCAGTTGATGTTG-TTGCTAATGCGTATCGCATCTCAAGGGAAGAGGCTCGAAGACTCAAGAACAA-CAGGGGAGACGAGTATGGTCCATTCCCTCCCAGATTACAACAACAAATCTACCCAGAATTC-TCGAATGAATCTAAAGGCGAGACTTCAGAGTAATGTAACTAAGATCGAATATTAGGAAAGCAAAATAAAGGGGTAATTGGAT
C1
BI796944,  tissue: Endosperm, dev stage: 10 days after anthesis,
 
 A 
  .................................................................................................................................................................................................................................................................................................................TAGAGTAAATCTATACCAGAATGCTATTCTCACACCATTCTGGAATGTAAATGCTCATAGTTTGATGTATGTGATTC-AAGGGCGTGCTCAAGTTCAAGTCGTCAGTAACCTTGGAAAGACTGTGTTCGATGGTGTTCTTCGTCCAGAACAAC-TATTGATTATTCCACAAA-CTATGTTGTCTTAAAGAAAGCACAACATGAAGGATGCCAATATATTGCAATCAACAC-AACGCTAATGCCTTTGTGAGCCACCTTGCAGGGGTAGACTCAGTATTCCGTGCCTTACCAGTTGATGTTG-TTGCTAATGCGTATCGCATCTCAAGGGAAGAGGCTCGAAGACTCAAGAACA-CCAGGGGAGACGAGTATGGTCCATTCCCTCCCAGATTACAACAACAAATCTACCCAGAATTC-TCGAATGAATCTAAAGGCGAGACTTCAGAGTAATGTAACTAAGATCTAATATTA
D1
BI796140,  tissue: Endosperm, dev stage: 10 days after anthesis,
 
 . 
  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTTG-TTGCTAATGCGTATCGCATCTCAAGGGAAGAGGCTCGAAGACTCAAGAACAACCAGGGGAGACGAGTATGGTCCATTCCCTCCCAGATTACA-CAACAA-TCTACCCAGAATTC-TCGAATGAATCTAAAGGCGAGACTTCAGAGTAATGTAACTAAGATCTAATA
E1
BI799692,  tissue: Endosperm, dev stage: 10 days after anthesis,
 
 A 
  ..................................................................................................................................................................................................................................................................................CTATCCTTAATATCATCCAAATGAGTGCTACTAGAGTAAATCTATACCAGAATGCTATTCTCACACCATTCTGGAATGTAAATGCTCATAGTTTGATGTATGTGATTC-AAGGGCGTGCTCAAGTTCAAGTCGTCAGTAACCTTGGAAAGACTGTGTTCGATGGTGTTCTTCGTCCAGAACAACCTATTGATTATTCCACAAAACTATGTTGTCTTAAAGAAAGCACAACATGAAGGATGCCAATATATTGCAATCAACAC-AACGCTAATGCCTTTGTGAGCCACCTTGCAGGGGTAGACTCAGTATTCCGTGCCTTACCAGTTGATGTTG-TTGCTAATGCGTATCGCATCTCAAGGGAAGAGGCTCGAAGACTCAAGAACA--CAGGGGAGACGAGTATGGTCCATTCCCTCCCAGATTACAACAACAAATCTACCCAGAATTCCTCGAATGAATCTAAAGGCGAGACTTCAGAGTAATGTAACTAAGATCTAA
F1
BI799035,  tissue: Endosperm, dev stage: 10 days after anthesis,
 
 A 
  .....................................................................................................................................................................................................................................................................................................AATGAGTGCTACTAGAGTAAATCTATACCAGAATGCTATTCTCACACCATTCTGGAATGTAAATGCTCATAGTTTGATGTATGTGATTCCAAGGGCGTGCTCAAGTTCAAGTCGTCAGTAACCTTGGAAAGACTGTGTTCGATGGTGTTCTTCGTCCAGAACAAC-TATTGATTATTCCACAAAACTATGTTGTCTTAAAGAAAGCACAACATGAAGGATGCCA-TATATTGCAATCAACACCAACGCTAATGCCTTTGTGAGCCCCCTTGCAGGGGTAGACTCAGTATTCCGTGCCTTACCAGTTGATGTTG-TTGCTAATGCGTATCGCATCTCAAGGGAAGAGGCTCGAAGACTCAAGAACCACACGGGGAGACGAGTATGGTCCATTCCCTCCCAGATTACAACAACAA-TCTACCCAGAATTC-TCGAATGAATCTAAAGGCGAGACTTCAGAGTAATGTAACTAAGATCTAATA
G1
BI798343,  tissue: Endosperm, dev stage: 10 days after anthesis,
 
 A 
  ....................................................................................................................................................................................................................................................................................................AAATGAGTGCTACTAGAGTAAATCTATACCAGAATGCTATTCTCACACCATTCTGGAATGTAAATGCTCATAGTTTGATGTATGTGATTC-AAGGGCGTGCTCAAGTTCAAGTCGTCAGTAACCTTGGAAAGACTGTGTTCGATGGTGTTCTTCGTCCAGAACAAC-TATTGATTATTCCACAAAACTATGTTGTCTTAAAGAAAGCACAACATGAAGGATGCCAATATATTGCAATCAACACAAACGCTAATGCCTTTGTGAGCCACCTTGCAGGGGTAGACTCAGTATTCCGTGCCTTACCAGTTGATGTTG-TTGCTAATGCGTATCGCATCTCAAGGGAAGAGGCTCGAAGACTCAAGAACAACCAGGGGAGACGAGTATGGTCCATTCCCTCCCAGATTACAACAACAAATCTACCCAGAATTC-TCGAATGAATCTAAAGGCGAGACTTCAGAGTAATGTAACTAAGATCTAATATTA
H1
BI796757,  tissue: Endosperm, dev stage: 10 days after anthesis,
 
 C 
  ..................................................................................................................................................................................................................................................................................................................................................ACCATTCTGGAATGTAAATGCTCATAGTTTGATGTATGTGATTC-AAGGGCGTGCTCAAGTTCAA-TCGTCAGTAACCTTGGAAAGACTGTGTTCGATGGTGTTCTTCGTCCAGAACAAC-TATTGATTATTCCACCAAACTATGTTGTCTTAAAGAAAGCACAACATGAAGGATGCCCATATATTGCAATCAACAC-AACGCTAATGCCTTTGTGACCAACCTTGCAGGGGTAGACTCAGTATTCCGTGCCTTACCAGTTGATGTTGGTTGCTAATGCGTATCGCATCTCAAGGGAAGAGGCTCGAAGACTCAAGAACAA-CAGGGGAGACGAGTATGGTCCATTCCCTCCCAGATTACAACA-CAAATCTACCCAGAATTC-TCGAATGAATCTAAAGGCGAGACTTCAGAGTAATGTAACTAAGATCTAATATTAGGAAAGCAAAATAAAGGGGTAATTGGATCCATGTCATTGCGAAAAATGTCGATTAAGATAATTGTCATTACCATTCGTCTG
Haplotype info:
 

Top BLAST hit:
gb|EAY85200.1| hypothetical protein OsI_006433 [Oryza sativa (indica
            cultivar-group)]
          Length = 580

 Score =  415 bits (1067), Expect = e-114
 Identities = 215/252 (85%), Positives = 226/252 (89%), Gaps = 3/252 (1%)
 Frame = +1

Query: 1    LQSQNDQRGEIIHVKNGLQLLKPTLTQRHEQEQAQYQEVQFSEKPQTSSRWNGLEENLCT 180
            LQSQNDQRGEIIHVKNGLQLLKPTLTQRHEQEQAQYQEVQFSEKPQTSSRWNGLEENLCT
Sbjct: 332  LQSQNDQRGEIIHVKNGLQLLKPTLTQRHEQEQAQYQEVQFSEKPQTSSRWNGLEENLCT 391

Query: 181  IKTRLNIENPTRADSYDPRAGRITSLDSQKFPILNIIQMSATRVNLYQNAILTPFWNVNA 360
            IKTRLNIENPTRADSYDPRAGRITSLDSQKFPILNIIQMSATRVNLYQNAILTPFWNVNA
Sbjct: 392  IKTRLNIENPTRADSYDPRAGRITSLDSQKFPILNIIQMSATRVNLYQNAILTPFWNVNA 451

Query: 361  HSLMYVIQGRAQVQVVSNLGKTVFDGVLRPEQLLIIPQNYVVLKKAQHEGCQYIAINTTL 540
            HSLMYVIQGRAQVQVVSNLGKTVFDGVLRPEQLLIIPQNYVVLKKAQHEGCQYIAINT  
Sbjct: 452  HSLMYVIQGRAQVQVVSNLGKTVFDGVLRPEQLLIIPQNYVVLKKAQHEGCQYIAINTNA 511

Query: 541  MPL*ATLQG*TQY--SVPYQLMLLLMRIA-SQGKRLEDSRTTRGDEYGPFPPRLQQQIYP 711
                + L G      ++P  ++    RI+  + +RL+++   RGDEYGPFPPRLQQQIYP
Sbjct: 512  NAFVSHLAGVDSVFRALPVDVVANAYRISREEARRLKNN---RGDEYGPFPPRLQQQIYP 568

Query: 712  EFSNESKGETSE 747
            EFSNESKGETSE
Sbjct: 569  EFSNESKGETSE 580