SNP report 1 next >

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ref|NP_001062114.1| Os08g0490900 [Oryza sativa (japonica cultivar-group)]
Frame: +1 Start: 223 End: 498
Rice bin: 1.0 Wheat nulli bin(s):	
 
Cultivar and tissue source: 
SNP summary 
Full sequence
 
 
  1.................................................51................................................101...............................................151...............................................201...............................................251...............................................301...............................................351...............................................401...............................................451...............................................501...............................................551...............................................601...............................................651...............................................
 
ABCDEFGHIJKL
  ..................................................A................B.......................................................C.................................................................................................................................D................................................................................E.................................F......................................................G........H............................................................................................................................I..............J.KL....................................................................................................................
 
varietal?
..................................................y................y.......................................................y.................................................................................................................................y................................................................................n.................................n......................................................n........n............................................................................................................................n..............n.nn....................................................................................................................
 
confident?
..................................................y................y.......................................................y.................................................................................................................................y................................................................................n.................................y......................................................y........y............................................................................................................................y..............y.yy....................................................................................................................
 
Consensus
 
.S..Y..E..H..S..P..P..L..T..S..K..F..P..S..R..P..F..P..H..L..F..R..D..P..F..*D..R..F..L..M..A..P..K..A..E..K..K..P..A..E..K..K..P..A..E..E..K..A..E..K..K..P..R..A..E..K..R..V..P..S..K..E..G..G..E..K..K..G..K..K..K..A..K.*.K..S..V..E..T..Y..K..I..Y..I..F..K..V..L..K..Q..V..H..P..D..I..G..I..S..S..K..A..M..S..I..M..N..S..F..I..N..D..I..F*..E..K..L..A..A..E..A..A..K..L..*A..R..Y..N..K..K..P..T..I..T..S..R..E..I..Q..T..S..V..R..L..V..L*..P..G..E..L..A.*.K..H..A..V..S..E..G..T..K..A..V..T..K..F..T..S..S..*..G..A..A..A..R..C..*Y..D..P..V..*..F**..S..Y..L..G..L..C*..*..V..V..R..A..T..M..*..N..L..L..*..L..L..N..E..S..V..T..P..V..E..V..F..*..Y..I..V..I..L..L..V..*..F..A..S..N..L..D..G..V
  AGCTACGAACACTCGCCGCCACTCACCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGACCCATTTG*ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG*AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT*CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG*CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT*CCCCGGCGAGCTCGCC*AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT*ACGATCCTGTTTAATT**CTCATATTTAGGCCTGTG*CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTTGAAGTTTTCTAATATATTGTAATCTTGCTAGTATAATTTGCTTCAAACCTGGATGGGGTTTCCA
C1
CB179546,  cv: A188,
 
 CCGCCTTAA 
  AGCTACGAACACTCGCCGCCACTCACCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGNTTAATTTTCTCATATTTAGGAC
R1
CB278303,  cv: A188,
 
 CCGCC 
  AGCTACGAACACTCGCCGCCACTCACCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGNCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCC
M2
DW245905,  cv: A188,
 
 CCGCCTTA 
  .........................CCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTGGATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CNAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCCCAAGCACGCCGTATC
O2
DW476020,  cv: A188, dev stage: mature,
 
 CCGCCTTAATCA 
  AGCTACGAACACTCGCCGCCACTCACCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGG-CGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTGTTCATGCAACAATGTAGAATTTGTTATAATTGCTGAA
P2
DW588035,  cv: A188,
 
 CCGCCTTA 
  AGCTACGAACACTCGCCGCCACTCACCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAG
Y2
CF675006,  cv: A188,
 
 ...CCTTAATCG 
  ............................................................................................................................................................................................................................................................TCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCT
Z2
CN844997,  cv: A188,
 
 ....CTTAATCG 
  ....................................................................................................................................................................................................................................................................................................GTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTGGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTT
C3
CB924237,  cv: A188,
 
 ...CCTTAATCG 
  .....................................................................................................................................................AGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATC
E3
CF675019,  cv: A188,
 
 CCGCCTTAATCG 
  .GCTACGAACACTCGCCGCCACTCACCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATC
F3
CF384593,  cv: A188,
 
 CCGCCTTAATCG 
  AGCTACGAACACTCGCCGCCACTCACCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTATTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAAT
G3
CF273136,  cv: A188,
 
 ..GCCTTAATCG 
  ......................................................................................................................GAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCCCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTG
I3
CB924391,  cv: A188,
 
 CCGCCTTA 
  AGCTACGAACACTCGCCGCCACTCACCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGG
J3
CB924344,  cv: A188,
 
 CCGCC 
  AGCTACGAACACTCGCCGCCACTCACCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGNGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCNAGACGTACAGGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGGCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCG
B1
AI065733,  cv: B73, tissue: immature ear,
 
 ...CTCGCCCTC 
  ..................................................................................................................................................................................................................................CGTCGAGACGTACAAGATCAACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATTTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATTTT-CGAGAAGCTTGCCGCCGAGGCCGCCAAGCTCG-CCCGNTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAG
E1
AI065629,  cv: B73, tissue: immature ear,
 
 ...CTCGCCCTC 
  ........................................................................................................................................................................................................AGGGAAAGAAGAAGGCGAAG-AAGAGTGTCGAGACGTACAAGATCTACATTTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATTTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATTTT-CGAGAAGTTTGCCGCCGAGGCCGCCAAGTTCG-CCCGNTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCTTCGTCTT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAG
K3
AI065634,  cv: B73, tissue: immature ear,
 
 ...CTCGCCCTC 
  ..............................................................................................................................................................GGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGTTCAAGCAGGTGCACCCGGATATTGGCATTTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATTTT-GGAGAAGTTCGCTGCCGAGGCCGCCAAGTTCG-CCCGNTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCTTCGTCTT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAACAATGTAG
S2
CO454743,  cv: F-352 near isogenic line, tissue: endosperm,
 
 ..GCCCGCCCTC 
  ......................................................................................TGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTTGAA
T2
CO451460,  cv: F-352 near isogenic line, tissue: endosperm,
 
 CCGCCCGCCCTC 
  ..............................................CCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAA-CCAAGG-CGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAAGTTGCTTCTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTTGAAGTTT-CTAATATATTGTAATC
I2
AW331632,  cv: Illinois High Oil, tissue: embryo, dev stage: 14, 21, 28, and 35 days after pollination,
 
 ..GCCCGCATCG 
  ......................................................................................TGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCCAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGTAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCATGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAAT
K2
AW224847,  cv: Illinois High Oil, tissue: embryo, dev stage: 14, 21, 28, and 35 days after pollination,
 
 CAGCCCGCANCG 
  ......................................AAGCCGCCCCTTCCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCCAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGTAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGNCGCATGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGGG-CTAGGTTGnTCGTGCAACAATGTAGAATTTGTTATAATTGCTG
A1
BQ295637,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 ..ATCCTCCTCG 
  ...............................................................................CGATTCCTGATGGCGCCCAAGGGCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCTAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTTTCATCTCGCCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGCATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAAT
D1
BQ295617,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 ..ATCCTCCTCG 
  .......................................................................ATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTT
F1
BQ280033,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 ...TCCTCCTCG 
  ..............................................................................................................................GCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCA
G1
BQ279349,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 TAATCCTCCTCG 
  .............................................CCCTTTCCCCATCTCTT-CGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAAT
H1
BU101321,  cv: OH43, tissue: tassels,
 
 ..ATCCTCCTCG 
  .......................................................................ATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTTGAAGTTTTCTAA
I1
BQ279283,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 ....CCTCC 
  ..........................................................................................................................................................................................................................................................................................TTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCTACCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCA-GGCGGTTACCA-GTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTA
J1
BQ279808,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 ...TCCTCC 
  ...............................................................................................................................................................GGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-C
K1
BQ635752,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 .AATCCTCCTCG 
  ..................................................................GACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCA-GGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTCGTTATAATTGCTGAATGAATCAGTTACCCCTGTTGAAGTTTTCTAA
L1
BQ401185,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 ..ATC 
  ................................................................................................CAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGTCATCTT-CGAGAAGCTCGCCGCCGAGGCCGC
M1
BQ401166,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 TAATCCTCCTCG 
  ...................CACTCACCAGCAAATTCCCAAGCCGCCCCTTTCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCA
N1
BQ295797,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 ..ATCCTCCTCG 
  .............................................................................ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTT
O1
BQ779440,  cv: OH43, tissue: tassels,
 
 TAATTCTCCTCG 
  ...................CACTCACCAGCAAATTCCCAAGCCGCCCCTTTCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATTTT-CGAGAAGCTCGCCGCCGAGGCCGGCAAGCTCG-CCCGCTACAACAAGAAGCCCCCCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTT
P1
BQ779441,  cv: OH43, tissue: tassels,
 
 .AATCCTCCTCG 
  ..............................................................TCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTT
Q1
BQ635751,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 .AATCCTCCTCG 
  ...................................................CCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGGAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCGCCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCGCCATCACCTCCCGGGAGATACAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCTGACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATC
T1
BQ280034,  cv: OH43, dev stage: 0.5 cm to 2 cm,
 
 ...TCCTCCTCG 
  ............................................................................................................................................................................................................................................................TTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTT
Y1
BE575074,  cv: OH43, tissue: tassels,
 
 ..ATCCTC 
  ...............................................................................CGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGNCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGG
A2
BE345247,  cv: OH43, tissue: tassels,
 
 ....TCTCCTCG 
  .............................................................................................................................................................................................................................................................................................................CATGTCCATCATGAACTCCTTCATCAACGACATTTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG--TAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCA
C2
BE225241,  cv: OH43, tissue: tassels,
 
 ..ATCCTCCTCG 
  .......................................................................ATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTGCGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGAACTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCA-GTTTACATCCTCTTAGGGTGCCGCCGC-CGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG--TAGGTTGTTCGTGCAACAATGTAG
D2
BE345118,  cv: OH43, tissue: tassels,
 
 TAATCCTCCTCG 
  .....................................CAAGCCGCCCCTTTCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAA
E2
BE510602,  cv: OH43, tissue: tassels,
 
 TAATCCTCCTCG 
  .................................TTCCCAAGCCGCCCCTTTCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAATATTGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTANGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCA
F2
BE510601,  cv: OH43, tissue: tassels,
 
 ..ATCCTCCTCG 
  .....................................................................CCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGT
L3
BU098306,  cv: OH43, tissue: tassels,
 
 TAATCCTCCTCG 
  ...................CACTCACCAGCAAATTCCCAAGCCGCCCCTTTCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTT
M3
BQ778799,  cv: OH43, tissue: tassels,
 
 TAATCCTCCTCG 
  ..................................................TCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCA-GGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTT
G2
AW498223,  cv: Ohio43, tissue: whole premieotic anthers to pollen shed, dev stage: premieotic anthers to pollen shed,
 
 ....CCTCCTCG 
  ..........................................................................................................................................................................................................................................................................................................................AACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCGGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTTGAAG
H2
AW499242,  cv: Ohio43, tissue: whole premieotic anthers to pollen shed, dev stage: premieotic anthers to pollen shed,
 
 TAATCCTC 
  ....................................CCAAGCCGCCCCTTTCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTA
J2
AW360629,  cv: Ohio43, tissue: whole premieotic anthers to pollen shed, dev stage: premieotic anthers to pollen shed,
 
 ..ATCCTCCTCG 
  ........................................................................................ATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTAT
L2
AI738255,  cv: Ohio43, tissue: mixed, dev stage: ear length from 0.5 cm - 2.0 cm,
 
 ...TCCTCCTCG 
  ...................................................................................................................................................................................................................................................TCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTG
U1
BI595816,  cv: W64A, dev stage: 4 stages from 3-13 days after imbibing,
 
 .CGCCT 
  .......................................................ATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCC
V1
BI542964,  cv: W64A, dev stage: 4 stages from 3-13 days after imbibing,
 
 ..GCCTGCCCTC 
  ..............................................................................................................AGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTTGAAGTTT-CTAATATATTGTA
W1
BI698197,  cv: W64A, dev stage: 4 stages from 3-13 days after imbibing,
 
 .CGCCTGCCCTC 
  .........................................................CTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAACAA
X1
BI679669,  cv: W64A, dev stage: 4 stages from 3-13 days after imbibing,
 
 .CGCCTGC 
  ........................................................TCTCTTTCGCGCCCCATTG--ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGATGTAAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGG
Z1
BI245333,  cv: W64A, dev stage: 4 stages from 3-13 days after imbibing,
 
 CCGCCTGCC 
  ..........................................CGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGCTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGC
B2
BI478982,  cv: W64A, dev stage: 4 stages from 3-13 days after imbibing,
 
 ...CCTGCCCTC 
  ............................................................................................................................................................................................................................-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAAC
U2
DN207350,  cv: inbred B73,
 
 CCGCCTTAATCG 
  .........................CCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTGTTCGTGCAA
V2
DN226701,  cv: inbred B73,
 
 ..GCCTTAATCG 
  .......................................................................ATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTACT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTT
W2
DN219765,  cv: inbred B73,
 
 ...CTCGCCCTC 
  .............................................................................................................................................................................TGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATTTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTTGAAGTTT-CTAATATATTGTAATCTTGCTAGTATAATTTGCTTCAAACCTGGA
X2
DN206875,  cv: inbred B73,
 
 CCGCCCGC 
  ..........................CAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-TGAGAAGCTCGCTGCCGAGGCCGCCAAGCTCG-CCCACTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTCTCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTA
S1
CA828742,  
 
 TAATCCTCGTCG 
  ............................................CCCCTTTCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGGCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTG
N2
DV621935,  
 
 TAATCCTCCTCG 
  .................................TTCCCAAGCCGCCCCTTTCCCCATTTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAAAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTTAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTTCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTT
Q2
DV942601,  
 
 CAGCCCGCATCG 
  ......................................AAGCCGCCCCTTCCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCCAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGTAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCATGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCT
R2
DV942706,  
 
 CAGCTCGCATCG 
  ......................................AAGCCGCCCCTTCCCCCATCTCTTTCGCGACCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCCAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGTAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATTTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATTTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATTTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCATGTTGCT-ACGATCCTGTTTAATTTTCTCATATTTAGGACTGTG-CTAGGTTGTTCGTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCT
A3
CN071098,  
 
 ..GCCTGCCCTC 
  .....................................................................CCATTTG-ATCGATTCCTGATGGCGCCCAGGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTGACTAGGTTGCTTCTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTTGAAGTTT-CTA
B3
CF632526,  
 
 ..GCCTGCCCTC 
  ..............................................................................TCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTT
D3
CF627900,  
 
 CCGCCTGCCCTC 
  .......................CACCAGCAAATTCCCAAGCCGCCCCTTCCCCCATCTCTTTCGCGCCCCATTTG-ATCGATTCCTGATGGCGCCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAGCCGGCGGAGGAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTG
H3
CF633471,  
 
 ...CCTGCCCTC 
  ........................................................................................................................................GAGAAGGCCGAGAAGAAGCCAAGGGCGGAGAAGCGCGTGCCGAGCAAGGAGGGCGGCGAGAAGAAGGGAAAGAAGAAGGCGAAG-AAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATTGGCATCTCGTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT-CGAGAAGCTCGCCGCCGAGGCCGCCAAGCTTG-CCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCGGTGCGCCTCGTCCT-CCCCGGCGAGCTCGCC-AAGCACGCCGTATCCGAAGGGACCAAGGCGGTTACCAAGTTTACATCCTCTTAGGGTGCCGCCGCACGTTGCT-ACGATCCTGTTTAATT--CTCATATTTAGGCCTGTG-CTAGGTTGCTTCTGCAACAATGTAGAATTTGTTATAATTGCTGAATGAATCAGTTACCCCTGTTGAAGTTT-CTAATATATTGTAATCTTGCTAGTATAATTTGCTTCAAACCTGGATGGGGTTTCCA
Haplotype info:
 

CAGCCCGCATCG I2 K2 

CCGCCCGCCCTC X2 S2 

CCGCCTGCCCTC W1 V1 A3 B3 Z1 B2 H3 X1 

CCGCCTTAATCA U1 R1 J3 C1 M2 P2 I3 

CCGCCTTAATCG Y2 C3 V2 G3 Z2 

TAATCCTCCTCG A1 D1 H1 N1 C2 F2 J2 G2 J1 K1 P1 Q1 F1 T1 L2 Y1 I1 L1 H2 

TAATTCTCCTCG A2 

v
v
v
v
n
v
v
v
v
v
v
v
.
A
A
T
C
C
T
C
C
T
C
G
.
K1 P1 Q1 OH43 (3) 
T
A
A
T
C
C
T
C
C
T
C
G
.
G1 M1 D2 E2 N2 L3 M3 OH43 (6) unknown (1) 
.
.
A
T
C
C
T
C
C
T
C
G
.
A1 D1 H1 N1 C2 F2 J2 OH43 (6) Ohio43 (1) 
.
.
.
T
C
C
T
C
C
T
C
G
.
F1 T1 L2 OH43 (2) Ohio43 (1) 
T
A
A
T
T
C
T
C
C
T
C
G
.
O1 OH43 (1) 
.
.
.
.
C
C
T
C
C
T
C
G
.
G2 Ohio43 (1) 
.
.
.
.
T
C
T
C
C
T
C
G
.
A2 OH43 (1) 
.
.
.
T
C
C
T
C
C
.
J1 OH43 (1) 
.
.
.
.
C
C
T
C
C
.
I1 OH43 (1) 
.
.
A
T
C
C
T
C
.
Y1 OH43 (1) 
T
A
A
T
C
C
T
C
.
H2 Ohio43 (1) 
C
C
G
C
C
C
G
C
C
C
T
C
.
T2 F352 near isogenic line (1) 
.
.
G
C
C
C
G
C
C
C
T
C
.
S2 F352 near isogenic line (1) 
.
.
.
C
T
C
G
C
C
C
T
C
.
B1 E1 W2 K3 B73 (3) inbred B73 (1) 
C
C
G
C
C
T
G
C
C
.
Z1 W64A (1) 
C
C
G
C
C
T
G
C
C
C
T
C
.
D3 unknown (1) 
.
C
G
C
C
T
G
C
.
X1 W64A (1) 
.
C
G
C
C
T
G
C
C
C
T
C
.
W1 W64A (1) 
.
.
.
C
C
T
G
C
C
C
T
C
.
B2 H3 W64A (1) unknown (1) 
.
.
G
C
C
T
G
C
C
C
T
C
.
V1 A3 B3 W64A (1) unknown (2) 
C
C
G
C
C
.
R1 J3 A188 (2) 
.
C
G
C
C
T
.
U1 W64A (1) 
C
C
G
C
C
T
T
A
A
.
C1 A188 (1) 
C
C
G
C
C
T
T
A
.
M2 P2 I3 A188 (3) 
C
C
G
C
C
T
T
A
A
T
C
A
.
O2 A188 (1) 
C
C
G
C
C
T
T
A
A
T
C
G
.
U2 E3 F3 A188 (2) inbred B73 (1) 
.
.
G
C
C
T
T
A
A
T
C
G
.
V2 G3 A188 (1) inbred B73 (1) 
.
.
.
C
C
T
T
A
A
T
C
G
.
Y2 C3 A188 (2) 
.
.
.
.
C
T
T
A
A
T
C
G
.
Z2 A188 (1) 
T
A
A
T
C
C
T
C
G
T
C
G
.
S1 unknown (1) 
.
.
G
C
C
C
G
C
A
T
C
G
.
I2 Illinois High Oil (1) 
C
A
G
C
T
C
G
C
A
T
C
G
.
R2 unknown (1) 
C
A
G
C
C
C
G
C
A
T
C
G
.
Q2 unknown (1) 
C
A
G
C
C
C
G
C
A
N
C
G
.
K2 Illinois High Oil (1) 
C
C
G
C
C
C
G
C
.
X2 inbred B73 (1) 
Top BLAST hit:
ref|NP_001062114.1| Os08g0490900 [Oryza sativa (japonica cultivar-group)]
 dbj|BAF24028.1| Os08g0490900 [Oryza sativa (japonica cultivar-group)]
          Length = 368

 Score =  154 bits (390), Expect = 3e-36
 Identities = 81/92 (88%), Positives = 81/92 (88%)
 Frame = +1

Query: 223 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFXXXXXXXXXXXRYNKKPTITSR 402
           SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIF           RYNKKPTITSR
Sbjct: 277 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSR 336

Query: 403 EIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 498
           EIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 337 EIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 368