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dbj|BAB33421.1| putative senescence-associated protein [Pisum sativum]
Frame: +2 Start: 200 End: 649
Rice bin: 2.7 Wheat nulli bin(s):	7AL	7BL
 
Cultivar and tissue source: 
SNP summary 
Full sequence
 
 
  1.................................................51................................................101...............................................151...............................................201...............................................251...............................................301...............................................351...............................................401...............................................451...............................................501...............................................551...............................................601...............................................
 
AB
  ..............................................A...............................................................................................................................................................................................................................................................................................B...........................................................................................................................................................................................................................................................................................................................
 
varietal?
..............................................n...............................................................................................................................................................................................................................................................................................n...........................................................................................................................................................................................................................................................................................................................
 
confident?
..............................................n...............................................................................................................................................................................................................................................................................................n...........................................................................................................................................................................................................................................................................................................................
 
Consensus
 
..R..I..Q..P..T..A..R..W..E..G..S..F..E..A..A..D..H..G..T..W..P..D..R..L..S..P..W..H..G..P..L..G..A..Q..A..P..L..T..W..V..G..A..T..A..G..A..G..V..A..C..*..L..G..F..*..L..R..G..V..Q..S..*..S..G..T..R..S..F..A..P..L..A..F..Q..P..S..A..M..T..N..C..V..N..Q..R..F..L..S..S..R..L..N..Y..Y..R..D..T..V..I..S..R..V..K..L..T..C..L..T..T..V..*..P..S..S..R..S..L..L..V..G..E..Q..S..N..T..W..*..I..L..L..H..N..D..R..R..A..D..I..E..G..S..K..S..N..V..A..M..N..A..W..L..P..Q..A..S..Y..P..L..V..T..F..L..T..P..L..A..S..N..S..E..D..L..K..D..R..*..A..T..L..S..R..S..Y..S..Y..W..K..S..E..S..N..E..L..L..P..F..C..S..T..R..D..F..C..F..V..E..L..I..L..G..H..L..R..Y..L
  AAGGATTCAGCCCACCGCCCGTTGGGAAGGGAGCTTCGAGGCGGCCGATCACGGCACATGGCCGGACCGACTTAGCCCATGGCACGGGCCCTTGGGGGCGCAAGCGCCCCTAACGTGGGTCGGGGCGACGGCGGGCGCAGGCGTCGCATGCTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGGCACACGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGTGAATCAACGGTTCCTCTCGTCTAGGTTGAATTACTATCGCGACACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAA
A1
CB861447,  cv: Sloop, tissue: coleoptile, dev stage: coleoptile 1 day old,
 
 GC 
  AAGGATTCATCCCACCGCCCGTTGGGAAGGGAGCTTCGAGGCGGCCGATCACGGCACATGGCCGGACCGACTTAGCCCATGGCACGGGCCCTTGGGGGCGCAAGCGCCCCTAACGTGGGTCGGGGCGACGGCGGGCGCAGGCGTCGCATGCTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGGCACACGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGTGAATCAACGGTTCCTCTCGTCTAGGTTGAATTACTATCGCGACACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGATCGATAGGCCACGC
B1
CB861457,  cv: Sloop, tissue: coleoptile, dev stage: coleoptile 1 day old,
 
 AA 
  ....................GTTGGGAAGGGAGCTTCGAGGCGGCCAATCACGGCACATGGCCGGACCGACTTAGCCCATGGCACGGGCCCTTGGGGGCGCAAGCGCCCCTAACGTGGGTCGGGGCGACGGCGGGCGCAGGCGTCGCATGCTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGGCACACGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGTGAATCAACGGTTCCTCTCGTCTAGGTTGAATTACTATCGCGACACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTT
C1
CB861201,  cv: Sloop, tissue: coleoptile, dev stage: coleoptile 1 day old,
 
 GT 
  .....................TTGGGAAGGGAGCTTCGAGGCGGCCGATCACGGCACATGGCCGGACCGACTTAGCCCATGGCACGGGCCCTTGGGGGCGCAAGCGCCCCTAACGTGGGTCGGGGCGACGGCGGGCGCAGGCGTCGCATGCTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGGCACACGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGTGAATCAACGGTTCCTCTCGTCTAGGTTGAATTACTATCGCGACACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGATCGA
D1
CB861309,  cv: Sloop, tissue: coleoptile, dev stage: coleoptile 1 day old,
 
 GC 
  ....................GTTGGGAAGGGAGCTTCGAGGCGGCCGATCACGGCACATGGCCGGACCGACTTAGCCCATGGCACGGGCCCTTGGGGGCGCAAGCGCCCCTAACGTGGGTCGGGGCGACGGCGGGCGCAGGCGTCGCATGCTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGGCACACGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGTGAATCAACGGTTCCTCTCGTCTAGGTTGAATTACTATCGCGACACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTT
E1
CB866776,  cv: Sloop, tissue: coleoptile, dev stage: coleoptile 3 days old,
 
 GA 
  ....................GTTGGGAAGGGAGCTTCGAGGCGGCCGATCACGGCACATGGCCGGACCGACTTAGCCCATGGCACGGGCCCTTGGGGGCGCAAGCGCCCCTAACGTGGGTCGGGGCGACGGCGGGCGCAGGCGTCGCATGCTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGGCACACGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGTGAATCAACGGTTCCTCTCGTCTAGGTTGAATTACTATCGCGACACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCT
F1
CB867287,  cv: Sloop, tissue: coleoptile, dev stage: coleoptile 3 days old,
 
 AC 
  ....................GTTGGGAAGGGAGCTTCGAGGCGGCCAATCACGGCACATGGCCGGACCGACTTAGCCCATGGCACGGGCCCTTGGGGGCGCAAGCGCCCCTAACGTGGGTCGGGGCGACGGCGGGCGCAGGCGTCGCATGCTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGGCACACGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGTGAATCAACGGTTCCTCTCGTCTAGGTTGAATTACTATCGCGACACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTT
G1
CB860616,  cv: Sloop, tissue: coleoptile, dev stage: coleoptile 1 day old,
 
 GA 
  ....................GTTGGGAAGGGAGCTTCGAGGCGGCCGATCACGGCACATGGCCGGACCGACTTAGCCCATGGCACGGGCCCTTGGGGGCGCAAGCGCCCCTAACGTGGGTCGGGGCGACGGCGGGCGCAGGCGTCGCATGCTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGGCACACGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGTGAATCAACGGTTCCTCTCGTCTAGGTTGAATTACTATCGCGACACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAA
H1
CB860488,  cv: Sloop, tissue: coleoptile, dev stage: coleoptile 1 day old,
 
 A 
  AAGGATTCAGCCCACCGCCCGTTGGGAAGGGAGCTTCGAGGCGGCCAATCACGGCACATGGCCGGACCGACTTAGCCCATGGCACGGGCCCTTGGGGGCGCAAGCGCCCCTAACGTGGGTCGGGGCGACGGCGGGCGCAGGCGTCGCATGCTAGCTTGTTTTCTTACTTAGAGGCGTCCAGTCATAATCCGGCACACGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAACTGTGTGAATCAACGGCTCCTCTCGTCTAGGTTGAATTACTA
I1
CB860653,  cv: Sloop, tissue: coleoptile, dev stage: coleoptile 1 day old,
 
 AC 
  ....................GTTGGGAAGGGAGCTTCGAGGCGGCCAATCACGGCACATGGCCGGACCGACTTAGCCCATGGCACGGGCCCTTGGGGGCGCAAGCGCCCCTAACGTGGGTCGGGGCGACGGCGGGCGCAGGCGTCGCATGCTAGCTTGGATTCTGACTTAGAGGCGTTCAGTCATAATCCGGCACACGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGTGAATCAACGGTTCCTCTCGTCTAGGTTGAATTACTATCGCGACACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGATCTAAAGGATCGATAGGCCACGCTTTCACGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTT
Haplotype info:
 

AC H1 

n
n
Top BLAST hit:
dbj|BAB33421.1| putative senescence-associated protein [Pisum sativum]
          Length = 282

 Score = 97.1 bits (240), Expect = 8e-19
 Identities = 71/161 (44%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
 Frame = +2

Query: 200 SFAPLAFQPSAMTNCVNQRFLSSRLNYYRDTVISRVKLTCLTTV*PSSRSLLVGEQSNTW 379
           SFAPLAFQPSAMTNC NQRFLS    YY + ++        T +  S   L+       W
Sbjct: 25  SFAPLAFQPSAMTNCANQRFLS----YYVELLLRHCHQWGKTNL--SHDGLIPAHVPYWW 78

Query: 380 *ILLHNDR----------RADIEGSKSNVAMNAWLPQASYPLVTFLTPLASNSEDLKDR* 529
              ++N            RADIEGSKSNVAMNAWLPQASYP   F    +     LKDR 
Sbjct: 79  ---VNNPTLGEFCFTMIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRSLKDRL 135

Query: 530 ATLSRSYSYWKSESNELLPFCSTRDFCF-VELILGHLRYLL 649
           ATLSR     +              F F +   LGHLRYLL
Sbjct: 136 ATLSRFVFVLEIRIKRAFTLLFHTRFLFSLSSSLGHLRYLL 176